Pistacia vera (pistachio): 116139249
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Entry
116139249 CDS
T07386
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116139249
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvy03019
]
116139249
03012 Translation factors [BR:
pvy03012
]
116139249
Enzymes [BR:
pvy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116139249
Messenger RNA biogenesis [BR:
pvy03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
116139249
Translation factors [BR:
pvy03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
116139249
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
dsrm
AAA_22
nSTAND3
ATPase
T2SSE
AAA_19
AAA_16
ABC_tran
AAA_23
PhoH
Myosin_head
Motif
Other DBs
NCBI-GeneID:
116139249
NCBI-ProteinID:
XP_031280781
LinkDB
All DBs
Position
Unknown
AA seq
1150 aa
AA seq
DB search
MHNYRLRALLSGSIRSLSNPTNRHLLHCSPSRPNANALFNLLALLPLSAPKRRRGFCGYA
AEQFSDDEYECDYETHQASSTVANIDEWKWKLSVLLRNETDQEIISRDKRDRRDYEQISN
LAKRMGLYSQIYGKVVVASKVPLANYRPDLDDRRPQREVVIPLSLQRRVEGLLQEHLDRI
QLSSGKVTESSDELKSIDRVEDVNLDENPDSFLDRSVMEKVLLRRSLQMRNMQRAWQESP
EGRKMTDFRKSLPAFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYVLESEIESGRGA
FCSIICTQPRRISAMAVSDRVSTERGEPLGETVGFKVRLEGMKGKNTHLLFCTSGILLRR
LLSDHNLNGITHVFVDEIHERGMNEDFLLIVLKDLLSRRRDLRLILMSATLNAELFSNYF
GEAPTIHIPGFTYPVQAHFLEDVLEMTGYKLSSFNQVDDYGQEKTWKTQRQLVPRKRKNQ
ITALVEDALQNSTFENYSSRARDSLACWTADCIGFNLIEAVLCHICRKERPGAVLVFMTG
WEDISCLRDQLKAHPLIGDPNRVLLLTCHGSMATSEQKLIFERPPPNVRKIVLATNMAEA
SITINDVVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGDCYHLYP
RCVYEAFAEYQLPELLRTPLNSLCLQIKSLQVRSIGEFLSAALQPPKPLAVQNAVDFLKM
IGALDEKENLTNLGKFLSMLPVDPKLGKMLVMGAIFRCFDPVLTIVSGLSVRDPFLLPQE
KKDLAGIAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAIHSLR
KQFSFILRDAGLLDEDTGTNNKLSHNQSMVRAVICSGLFPGISSVVHRETSMSFKTMDDG
QVFLYANSVNARYQTIPYPWLVFGEKVKVNTVFIRDSTGISDSILILFGGALSCGAQAGH
LKMLEGYIDFFMDPCLADCYLKLKEELDKLLRKKLDDRSIDIHKEGKYLMLAVQELVTGD
QCEGRFVFGRASKRPKESGDNSRFTKDGTNPKSLLQTLLMRAGHSPPKYKTKHLKTNEFR
ALVEFKGMQFVGKPKKNKQLAERDAAVEALAWLTHTSTDNRDSDDDTPPDVTDNMVKLLG
KRRRSKGRPH
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgcacaactacaggctcagagctttactctcgggctctatacgctcactctctaacccc
accaatcgtcacttacttcactgctctccttctaggccgaacgccaacgccttgtttaac
ttacttgcgctacttccactttctgcaccaaaacgacgccgtggcttctgcggctacgct
gccgagcagttctccgacgacgagtacgagtgtgactatgaaacccatcaggcgtcatca
acggtggccaatattgacgagtggaaatggaaactcagtgtgttgttacgcaacgaaact
gaccaagagatcatctccagagataaaagagatagaagagattatgagcagatctcaaat
cttgctaaaaggatggggctttacagtcaaatttatggaaaagtagtagttgcgagcaag
gttcctcttgctaattaccggccggatttggatgataggcggccacaaagggaggttgtg
atccccctaagcttgcagaggagagtcgaaggtctcctgcaggagcaccttgatagaatt
cagttaagttccggaaaggttactgagagttcagatgaattgaagtccattgatcgggtt
gaagatgtgaatctggatgaaaatccagattctttcctcgatcggtctgttatggagaag
gttcttctaaggaggagtttgcaaatgcgaaatatgcaaagagcttggcaggaatcgccc
gaaggcaggaagatgacggattttcggaaatctctacctgcattcaaggaaaaggaaagg
ttgctccaagcaatagctcggaatcaggtaatagtaatatccggagagacaggatgtggt
aagaccactcaacttcctcaatacgtattagagtcagaaatagaatctggccgtggagca
ttctgtagcataatatgcacacaacctcgaagaatatctgctatggctgtttcagataga
gtttccacagagagaggggagcctcttggtgaaacagttggcttcaaagttcgattagag
ggtatgaaaggaaaaaatacccatctgcttttttgcaccagtggtattttacttcgaagg
ctgctaagtgaccacaacttgaatggtatcacccatgtctttgttgatgaaattcatgag
cgaggcatgaatgaagattttctcttgattgtgttgaaggatcttctttcacgccgtagg
gatttgagactgattttaatgagtgcaactctgaatgctgagctgttctccaattatttt
ggagaagcacccacaattcacatcccgggctttacatatccagtgcaagctcactttttg
gaagatgtactagaaatgactgggtacaagttgagttcttttaaccaagttgatgactat
ggacaagagaaaacgtggaagacacagaggcagctggtgccacgaaaacggaaaaaccag
atcactgctcttgttgaggatgctctccaaaattctacttttgaaaattacagctccagg
gcacgtgattctcttgcatgttggacagctgattgcataggatttaatcttattgaggca
gttctgtgccatatatgtcgaaaagaacgcccaggtgctgtgttggtatttatgactggt
tgggaggatatcagctgtttgagggatcaacttaaagctcatccacttataggagatcct
aatcgagttttgcttctaacttgtcatggttcaatggcgacatctgaacaaaaactcata
tttgagagaccaccacctaatgtacgtaaaattgttctggcaacaaatatggctgaggca
agcattacaattaatgatgtagtctttgtggttgattgtggaaaagcgaaggaaaccact
tatgatgcattgaataacacaccttgtctactaccttcttggatatcacaagcgtctgct
cgacaaagaaggggcagggctggtcgtgtgcaacctggagattgttaccacctatatccc
agatgtgtttatgaagcttttgctgaatatcaacttcctgaacttttgagaactcccttg
aactctctctgcttgcaaataaagagtttgcaagttagaagtattggagaatttttatca
gcagctctgcaaccaccaaaaccattggctgtccaaaatgctgttgactttttgaagatg
attggggccttagatgagaaggagaatctgacaaatcttggaaagtttttgtcaatgctt
cctgtggatcccaagctcgggaaaatgttagtcatgggtgctatattccgttgctttgat
cctgtgttaactattgtatctgggctcagcgtcagggatcctttccttttgcctcaagaa
aagaaggatttagctggaatagcaaagtctagattctctgcaaaagactacagtgatcac
atggctcttgtccgtgcatatgaagggtggaaagatgctgaaagagaaggatcagcatat
gagtattgttggaggaatttcctgtctgcacaaactcttcaggcaatccattctcttcgg
aagcagttttccttcattttaagagatgctggtttacttgatgaagacacaggtaccaac
aacaaattaagtcacaaccagtccatggtccgtgctgtcatatgttctggtctctttcct
ggcatatcatcagttgtacacagagagacatccatgtcttttaaaaccatggatgacggt
caagtttttctatatgcgaattctgtgaatgcacgctatcagactattccttacccatgg
ctggtctttggtgaaaaagtgaaagtcaatacagttttcatccgtgattccactggaata
tctgattcgatactaatcctttttggtggtgctctaagctgcggggcacaggctggccat
ttgaaaatgctggaaggttatattgatttcttcatggatccttgtttggcagattgctat
ttgaagcttaaggaagaacttgataagcttcttcgcaaaaagcttgacgatcgtagcatt
gacattcacaaggaaggcaagtaccttatgcttgctgttcaagagctggtaacaggagat
caatgtgagggaagatttgtgtttggtcgtgcaagcaagagaccgaaggagtctggtgac
aacagcagatttacaaaagatggaacaaatcctaaaagcttactgcaaactcttttgatg
agagcaggccattcccctccgaaatacaaaacaaagcatcttaagacaaatgagttcagg
gcgctggtagagttcaagggaatgcaatttgtgggaaaaccaaagaaaaacaagcagctt
gcagagagggatgctgctgtagaagccttggcctggttgactcacacctctacagacaat
cgagactcggatgacgataccccacctgatgtcactgataatatggtaaaacttcttggg
aaacgtcgaagatcaaaaggccgccctcattga
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integrated database retrieval system
