Pistacia vera (pistachio): 116139297
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Entry
116139297 CDS
T07386
Name
(RefSeq) uncharacterized protein LOC116139297
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116139297
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvy03021
]
116139297
03019 Messenger RNA biogenesis [BR:
pvy03019
]
116139297
Transcription machinery [BR:
pvy03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
116139297
Messenger RNA biogenesis [BR:
pvy03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
116139297
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NUFIP1
DUF6845
XkdW
Motif
Other DBs
NCBI-GeneID:
116139297
NCBI-ProteinID:
XP_031280835
LinkDB
All DBs
Position
Unknown
AA seq
577 aa
AA seq
DB search
MQPHFNSFPHQIQSNSSTPQLPHQGFNSNMLQNSMPLQPQMGILNPQFPFNLGNGQAMPM
PMPNMQAPLMTQPNFMNAQNPFVFSQNNHLGMPQLPPMSQPQHNLNNVPMFPGTGQMFGC
NLSNLPQHLSQNMALQNLNQLVSMQMANPAFLGNPQFGLVHSNGVGQNVNQNRQNLVQPV
VDANGSIPSPSSRTQQNQNSQPSVFARSQGNSIRNGQGNASNNNWKNGSGKNFVRNPKRE
HSRGFQKSQLHHGDDAKRKYGFHNNHKAKGHRNEMTAKFGQANHLNQPKEKKRKSLALTY
TEKEIQQWCEERRKNYPTKANIEKRLSAKQLSSDIIDREAKIRREQLKDILAKQAELGVE
VAEVPSHYLFDSDKPVNGREEYTKPFNKRGRFQNKYDKRGRYNKKDLFAKKQKIADKDSP
NTPTFNKKKPTLLQKLLSADIRKDKSHLLQVFRFMVMNSFFKDWPEKPFKFPLVIVKEGG
SAGEVVEEKSLLVDNDVSEHSSRTAAENFEYGNNDNDGNKERQNQNIQAFDDDECEDDDK
DDDENNNDEQMDYHVKGKGIIAEEQARPEEEEGEIID
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgcaacctcacttcaattcctttccccatcaaatccagtccaattcttccactcctcag
cttcctcaccagggtttcaattctaacatgttacaaaattcaatgccacttcaacctcaa
atgggtattttaaatcctcaatttccgtttaatttaggtaatgggcaagccatgcccatg
cccatgcccaatatgcaagcaccattgatgactcaacctaatttcatgaatgctcaaaac
ccttttgttttctcacaaaataatcatctgggtatgccccaattgccgcccatgtctcaa
ccacaacataatttgaataatgttcccatgtttccgggtactggacaaatgtttggttgt
aatttatcaaatttgcctcaacaccttagccaaaacatggctttgcaaaacttgaatcaa
cttgtgtctatgcaaatggcgaatcctgcctttttggggaatccgcagtttggtcttgtg
catagtaatggtgttgggcaaaatgtaaaccaaaaccggcaaaatttggttcagccagta
gtggatgcaaatgggtcgataccatcgccttcaagtagaacacagcaaaaccagaactcg
cagccttctgtttttgcaaggtctcaggggaattctattagaaatggtcagggtaatgct
tcaaataacaattggaaaaatggttcagggaaaaattttgtaagaaatccaaaaagagag
cactcacgggggtttcagaagtctcaattacatcatggggatgatgcaaagagaaaatat
gggtttcataataaccacaaagcaaaaggacatcgcaatgagatgactgcaaaatttggt
caggctaatcatttgaaccaacctaaggaaaagaaaagaaaatcacttgctttgacctat
acggaaaaagaaatccaacaatggtgtgaagaacgtaggaagaactacccaacgaaggcc
aatattgagaagaggttgagtgcaaagcagttgagctccgacatcattgatagagaggcc
aaaatacggcgtgagcaactcaaggatatcttggccaagcaggccgagttgggagttgaa
gtcgcagaagttccatcacattatctttttgactctgataaaccagtgaatggaagggag
gagtatacaaaaccttttaataagagggggagatttcaaaacaagtatgataagagaggg
agatataataagaaagacctatttgctaagaagcaaaagatagcagataaggattcgcct
aacacccctactttcaataagaagaagccaacgcttctgcagaagcttctaagtgctgat
attaggaaagacaaaagccatttgttacaggtttttaggttcatggtgatgaattccttt
ttcaaagattggccagagaagcctttcaaatttcccttggttatagttaaagaaggtggt
tctgccggtgaggtggttgaagagaaatccttgcttgtagacaatgatgtttctgaacac
agcagcagaaccgctgctgaaaactttgaatatggcaataatgataatgatggtaataag
gaaaggcagaatcaaaacatccaagcctttgatgatgacgagtgtgaggacgatgataag
gatgatgacgaaaataacaatgatgaacaaatggattatcatgttaagggaaagggtata
attgccgaagagcaggctagacctgaggaagaagaaggagaaatcattgactag
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