Pistacia vera (pistachio): 116139551
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Entry
116139551 CDS
T07386
Name
(RefSeq) LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116139551
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvy03019
]
116139551
Messenger RNA biogenesis [BR:
pvy03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
116139551
U7-dependent histone pre-mRNA processing factors
116139551
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
Beta-Casp
CPSF100_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-GeneID:
116139551
NCBI-ProteinID:
XP_031281074
LinkDB
All DBs
Position
Unknown
AA seq
739 aa
AA seq
DB search
MGTSVLIPPLCGVYNENPLSYLVSIDGFNFLIDCGWNDHFDTSLLQPLSKVASTVDAVLL
SHSDTLHLGALPYAMKQFGLSAPVFSTEPVHRLGLLTMYDQYLARRQVSEFELFTLDDID
SAFQNVTRLTYSQNYHLSGKGEGIVIAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE
KHLNGTVLESFVRPAVLITDAYNALNNQPPRQQREIFQDTISKTLKAGGNVLLPVDTAGR
VLELLLILEDYWQEHSLNYPIFFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLL
KHVTLLINKSELDNAPDGPKVVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGSL
ARMLQADPPPKAVKVTMSRRVPLVGEELVAYEEEQNRLKKEEALKASLIKEEESKASHGS
DNNLSDPMIIDANNAHAPVDVVDPPGGGYKDMLIDGFVPLSTSVAPMFPFYENTFDWDDF
GEVINPDDYVINDQDMDQVAMHVGDMDGKLDEGSASLILDTKPSKVVSNELTVQVKCSLI
YMDYEGRADGRSIKTILAHVAPLKLVLVHGSAEATEHLKQNCLKHVCPHVYTPQIEETID
VTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTSPPPHKSV
LVGDLKMADFKPFLSSKGIQVEFALGGALRCGEFVTIRKVGNAGQKGGGSGTQQIVIEGP
LCEDYYKIREYLYSQFYLL
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgggaacatcagtgctgatacctcccttatgtggagtttacaacgagaatccattatcg
tacctagtctcaatcgacggcttcaacttcttaatcgattgcggatggaacgaccatttc
gatacctctctccttcaacctctctccaaggtagcgtccaccgtagatgcggtgcttctt
tctcattcagatacgcttcacttgggagctctcccttatgccatgaagcaattcggcctc
tccgctccggtcttttccactgaaccggtgcacagattaggtctcctcactatgtacgat
cagtaccttgcccggaggcaagtctcggagtttgagttgtttacactggacgatattgac
tctgctttccaaaatgtgaccaggctaacgtactctcagaactaccatctatctgggaaa
ggagaagggattgtgattgctcctcatgtggctgggcatctcctgggaggtaccgtgtgg
aaaattacgaaggatggagaagatgttatatatgctgttgactataaccgtcgcaaggaa
aagcatttgaatggaactgttctagaatcttttgttcggcctgctgttctgataacggat
gcctataatgctttgaacaatcaacctcctaggcagcaaagagagatttttcaagatact
atttcaaaaactctaaaagctggtgggaatgtattactacctgtggacactgctgggcga
gtattggaactcctcttgattttggaagattactggcaagaacattctttgaactatccc
attttcttcctcacgtatgtctcatcaagcacaattgattatgtcaagagtttcctggag
tggatgggtgattccataacaaagtcttttgaaacgtcacgtgacaatgcttttcttcta
aagcatgtcacccttttgattaacaagagtgaacttgataatgctcctgatggtcccaag
gttgtcctagcatccatggccagtttggaagcaggtttttctcatgatatatttgttgaa
tgggcaagtgatgtcaagaatcttgttctttttactgaaagaggccagtttggtagttta
gcccgcatgcttcaggcggatccaccaccaaaagctgttaaagtcaccatgtccaggagg
gttcctttggttggagaggagttagttgcttatgaagaagagcaaaaccgattaaaaaag
gaagaagctctgaaagccagtctcattaaggaggaagaatctaaagcttctcatgggtct
gataacaatttgagtgacccaatgatcattgatgctaacaatgcacacgctcctgtagat
gtggtcgatcctcctgggggtggatacaaggacatgttaattgatggatttgttcctctg
tccaccagtgttgccccaatgtttccattctatgaaaatacatttgactgggatgatttt
ggtgaagtcataaatcctgatgattatgtgattaatgatcaagacatggatcaagtagca
atgcatgttggggatatggatggaaaacttgatgaaggttctgctagcttgatacttgat
acaaagccttcaaaagttgtatctaatgaactgactgtacaagtgaagtgttcgttgatt
tatatggactacgaggggcgtgctgatggccgctcaatcaaaacaattcttgctcatgtg
gcccctttaaagcttgttttggtacatggatcagctgaggccactgaacatttgaaacaa
aactgcttgaagcatgtttgccctcatgtttatactccccaaattgaagaaacaattgat
gtcacctctgacttatgtgcttataaggtacaactttctgagaagttgatgagtaatgtg
ctctttaagaagttgggagattatgaaatagcttgggttgatgctgaagttgggaagaca
gagaatggcatgctgtctttattaccaatctcaacctcccctccaccacataaatcagtg
cttgttggtgatctgaaaatggctgattttaagccttttctcagcagtaagggtatccag
gtagaatttgcccttggtggagcattgcgatgtggtgagtttgtcacaattcgcaaggtt
gggaatgctggccagaagggtggaggctctggtactcagcagattgtgatagaaggcccc
ttatgtgaagactactacaagattcgcgagtatctgtattcacagttctatttactataa
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