Pistacia vera (pistachio): 116140007
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Entry
116140007 CDS
T07386
Name
(RefSeq) LOW QUALITY PROTEIN: serine/threonine-protein kinase SMG1-like
KO
K08873
serine/threonine-protein kinase SMG1 [EC:
2.7.11.1
]
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116140007
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
pvy01001
]
116140007
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvy03019
]
116140007
Enzymes [BR:
pvy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
116140007
Protein kinases [BR:
pvy01001
]
Serine/threonine kinases: Other
PIKK family [OT]
116140007
Messenger RNA biogenesis [BR:
pvy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
116140007
mRNA cycle factors
Common to processing body (P body) and stress granule
116140007
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PI3_PI4_kinase
SMG1
FRB_dom
Motif
Other DBs
NCBI-GeneID:
116140007
NCBI-ProteinID:
XP_031281497
LinkDB
All DBs
Position
Unknown
AA seq
2991 aa
AA seq
DB search
MCGLVNAVYDMDDWSYAVRQSAAVAYGALCVVVSIPIGSNGRQNHVMLGSMVDRFIGWAL
PLLSNVSAGEXPRLALEGLREFLIIDVGGIERYALPILKACQELLEDERTSLSLLHRLLG
VLTLISLKFSRFFQPHFLDIVDLLLGWALVPDLAESDRCVIMDSFLQFQKHWVGSLQFSL
GLLSKFLDDMDVLLQDGSHGTPQQFRRLLALLSCFSTVLQSTASGLLEMNLLEQISEPIS
KMLPRLLGYLSMVGWKFGWSKWIGDSWKCLTLLAEILRKRFSTFYPLAVDVLFESLQPLG
AGKITSFQVHGVLKTNLQLLSLQKFGLLPSSVQKLLQFAAPISQLRLHPNHLITGSSAAT
YIFLLQHGNNEVVQQAVSSSIEELXLLKGMLGKTSGHGDEVDSATNFKSYSKLELFAFIK
FDLKVLLTCVFVGGGIGLIGQPDVAAIYLKRPEKLVSFIIEELDPFESAIQESVELQISV
IKTLEKLTAVEFLSNISLLYQSTDNASVDGASKKVLNGSGFRDRFSAAIVDHMKKNKELM
VKALNFSSPLGVKVAALEWVKKFSENLVSINEKPNLNTYFYEAFGYVSISGNMVFSVLEA
ASDKEPKVRSHVASVLELLLQARLIHPMYFSSIAEVLLERVGDPDIDIRSAFVRLFSHVL
PTMMYTCGLNDSGVCGTCRPGFLTLSNGSNLHWKQVFALKPLNWQLHSQQLVSVLSYISQ
RWKVPLSSWIQRLIHSCKSSKDYTSGQHEETGNIGVNDIWLDIKVGEGILERIFSVNNLA
GAWWAIQDAARYCIATRLRTNLGGPTQTFAALERMHLDIAHVLQLDTEQIDGNLSIIGSS
GTHLLTMRLLLDFVEALKKDVYNAYEGSAVLPPATRQSSLFFRANKKVCEEWFSCMCEPM
MNAGLALQCHDATIQYCTLRLQELRNLVASALKDKPRAQVTENLHNLRSRYSGDILQVIX
HMALALCKSHESEALFGLQKWVSMTFSSLLVDEHQSLNHSGAVGPFSWITGLIYQAEGQY
EKAAVHFAHLLQTEESLSSMGSDGVQFAIVRIIESYTAVSDWKYPEFWLLELQTLRAKHA
GKSYSGALTTAGNEIDAIHALAHFVEGDFQASWTCLDLTPKSSSELTLDPKLALQRGDQM
LLQALLLLSEGKVDKVPHELQKAKTMLDEILSVLPLDGLSEAAVHATRLHCIFAFEEGQK
FIGNHAKSKQHQSILSSYVLSMKTVINSVHQDCSPWLKVLRVYQTILPSSLVTLNLCMNL
SSLARKQKNTLLANRLNNYLRDQLFSCSEERYHEFLISNLQYEEILLLHSQNKYEDAFVK
LWSFVCPLMLSSVPVVSGSSDSYLKAKACLKLSNWLRRDYPDLSLENIVLKMCADFNMAD
ISSFAGGGTSSVDEKLSSKPSVGVIIEEMVGTATKLSTHLCSTMGKSWISYASWCFSQAR
NALLAPHESVLHSCSFSPLLSAEIPPERFKLTEGEIVRVESAIVQLFQDKGVEKGLKDEG
DVWNVCPDSVEHLRNENLVKALRQQVVDIIEAAAGLHSEENSNGECLSTTVASQLQLCFL
RADVDLEETHLLSAVDSLVDVWWSLRRRRVSLFGHAAHGFIKYLSYSSTKLCNDQLYGAD
SDSLKQKTGSYVLRATLYVLHILLNYGVELKDTLEPGLSMVPLLAWQEVTPQLFARLSTH
PEQVVRKQFEGLLIMLAKLSPWSIVYPTLVDVNAYEEKPSQELQHVLGCLTELYPRLIQD
VQLMINELGNVTVLWEELWLSTLQDLHGAHGILMTSSQIFFADVMRRINVLKEEVARIAE
NATLSQSEKRKINAAKYSAMMSPIVMALERRLSSTSRKPETPHEIWFHEVYGEQLKSAIL
NFKTPPASATALGDVWLPFDSIAASLASRQRKSSVSLSKVAPQLALLSSSDVPMPGLEKQ
VTASETDGGLAATLQGNVTIASFSEDLTILSTKTKPKKLVILGSDGKKYTYLLKGREDLR
LDARIMQLLQAVNSFLHSTPATRSQSLGIRYYSVTPISGRAGLIQWVDNVISIYSVFKSW
QSRVQLAQPLTVAAGNTKNYVPPPIPRPSDMFYGKIIPALKEKGIRRVISRRDWPHDVKR
KVLLDLMKEVPRQLLHQELWCASEGFKAFSSKWKRYAGSVAAMSMVGHILGLGDRHLDNI
LVDFSSGEIVHIDYNVCFDKGQRLKVPEIVPFRLTQTIEAALGLTGIEGTFRANCEAVIS
VLRKNKDIFLMLLEVFVWDPLIEWTRGDFHDDAAIGGEERKGMELAVSLSLFASRVQEIR
VPLQEHHDLLLAAVPAVESALERFADVLNQYELTSALFYRADQERSNLIVRETSAKTIVA
EATCNSEKVRASFEFQAREFAQAKALIAEKAQEATTWMEQHRRVLDALRSNLIPEINTCI
KLSGLSDALSLTSAVLVAGVPFTIVPEPTQVQCHDIDKEVSQLIAELDQGLSSASVALQA
YALALQRILPLNYLTTSAVHGWAQVLQLSANALSADILTVARRQAAELIVKIHGDNIVSI
KCNHEQLCLEVEKYGSEIEKVEKECAELVNSIGSETESKAKDRFLSVFMKYMKSADLLRK
EYANSSYQSGQLKYDGRKDARLQGAQEENKERVLSVLNIAVSNLYEEVKRRVLEIFSDTV
GVMRGSNRLRSDFGTIFCEFEEQVEKCILVAEFVNELWQIIGKDMSNDDADVDYSKYHPE
KNWASIFKTSLLSCKNLVGQMTEVVLPDVMRSAISFNSEVMDAFGSISQIRGSIDTALEQ
LVEVELERASLVELEQNYFVKVGLITEQKLALEEAAVKGRDHLSWEEAEELASQEEACRA
ELNQLHQTWNHRDMRNSSLMKQEADIRNALVSSERHFQSVIGAEEFREPHVLRSKALLTT
LVKPFSELESVDKTLTSFRFVDSKSDGIPKLAELMSSGRSISECIWNFGSLLSSHSFFIW
KMGIVDSFLDSCIHDVASSVDQNLGFDQLFNVVKKKLELQLQEHVGLYLKE
NT seq
8976 nt
NT seq
+upstream
nt +downstream
nt
atgtgtggcttagttaatgcagtttatgacatggatgactggtcatatgcagtgaggcag
tctgcagcagttgcttatggtgcactctgtgtggtggtttcaatccctataggatcaaat
ggtcggcagaaccatgttatgcttggcagtatggtggatcggttcattggttgggctttg
ccattgcttagcaatgtcagtgctggagagngaccacgattggctttggaaggattacgt
gagtttcttattattgatgttggtgggattgagagatatgctttaccaatcctcaaagca
tgtcaagaacttcttgaggatgagagaacctccttgagtttattacaccgactcttgggt
gttttaactttgatttcgttgaagttttctagattcttccaacctcattttctggacatt
gttgatctacttcttggatgggcattggtaccagaccttgctgaatcagataggtgtgtt
attatggatagtttcttgcaatttcaaaagcactgggtgggtagtttgcaattttcgctt
ggacttctgtctaagttcttggatgacatggatgtgctgcttcaggatgggagtcatggg
accccacaacaatttcgacgattgcttgctctgctttcttgcttttcaacggtactgcag
tccactgcttctgggttgctcgaaatgaatctactcgaacaaattagtgaaccaattagc
aaaatgcttcctcggttgttgggatatttatcaatggttggatggaagtttggttggtca
aaatggattggggattcatggaagtgcttgactctcttggcagaaatattacgcaaaagg
ttttccaccttttatccacttgcggttgatgttttgtttgaaagtttgcaacctcttgga
gctgggaagattacctcctttcaagttcatggggttttgaaaactaatcttcagctatta
tctctgcagaagtttggtcttcttccatcatctgtgcaaaaattacttcaatttgctgca
cctatatctcagctgcgtttgcatccaaatcacttaataacagggagttctgctgctact
tatattttcttgcttcaacatggcaataatgaagttgttcaacaggcagtaagctcatcg
attgaagagctgtaattgttgaagggtatgcttggaaaaacttctggtcatggagatgag
gttgatagtgccacaaattttaaatcctattcaaaacttgagttgtttgcatttattaaa
tttgatttgaaagttctgttaacctgtgttttcgttggtgggggtatcggtttgattggt
caaccagatgttgctgccatatatctaaaacggccagaaaaattggtgtcctttattata
gaggaactagatccttttgaatcagctattcaggaatctgtggaattgcaaatcagtgtt
atcaaaacattggaaaagctaactgcagttgaattcttgagcaatatttccttattatac
cagagtactgataacgcttcagtggatggtgcttccaagaaggtcctaaatggtagcggt
ttcagggataggttttcagctgcgattgttgatcatatgaagaagaacaaagagctcatg
gtgaaagctctcaatttttcttctccccttggagttaaagtagcagcccttgaatgggtt
aaaaaattttctgagaatcttgtttctattaatgagaaaccaaatctgaacacttatttc
tatgaagcatttggatatgttagtatttctgggaatatggttttctcagtcttggaagct
gcatctgacaaggaaccaaaagtgaggtcacatgttgcatcagtcttggagctacttctg
caagcaagactcatacatcccatgtatttttcctccatagctgaagtgctcctggaaaga
gttggtgatcctgatattgacataaggagtgcatttgttaggctgttttcccatgtcttg
ccaacaatgatgtacacttgtggtctaaatgattctggagtatgtggcacatgtaggcct
ggttttcttacattaagcaatggttccaacttgcactggaagcaagtatttgccttgaag
ccactaaactggcaacttcactcacaacaacttgtttccgttttgagctacatttcgcaa
agatggaaagtgcctctttcttcttggatccagcggctcattcatagctgtaagagttca
aaagactacacttcgggtcaacatgaggaaacaggaaacattggtgtcaatgacatatgg
ttggatataaaagtgggtgagggtattctggaaagaattttctcagttaataacctggct
ggtgcttggtgggctatacaggatgcggccagatattgtattgctacacgccttaggact
aatctgggtgggccaacccaaacttttgcagcattagagcgaatgcatttggacattgca
catgtgctacaacttgatactgaacaaattgatggaaacttaagtataataggttcttct
ggtactcatttgttaacaatgagattgcttttagattttgttgaggccctcaagaaagat
gtgtataatgcctatgagggatctgctgttttaccacccgctactcgccaaagttcattg
ttttttcgagcaaacaagaaagtctgtgaggagtggttttcttgcatgtgtgaaccgatg
atgaatgccggattggcactacagtgtcatgatgcaacaattcagtattgtactttgcgt
ctgcaggagcttagaaatcttgtggcttcagctttgaaggacaagcctagggcacaggta
actgagaatcttcataatctccggagtagatattctggagacatcttgcaggttatancg
cacatggcattggctttgtgtaagtctcatgaatcagaggctttatttggcctacaaaag
tgggtttcaatgactttctcatccttgcttgtggatgaacaccagtctctaaatcacagt
ggagcagttgggcccttttcatggatcactgggctcatatatcaggccgagggccagtat
gaaaaggctgctgttcactttgctcacttgttacagactgaggagtcactcagttctatg
ggttctgatggtgtacaatttgctattgtacgtataattgagagttacactgctgtatct
gattggaaatatccagaattctggctattagagttgcaaacacttcgtgccaagcatgct
gggaagagttattctggtgctttaacaacagcgggcaatgaaatcgacgcaattcatgcc
ttggcccattttgttgagggtgattttcaggcatcttggacatgcctggatctgacaccg
aaaagtagcagcgaactcactcttgatcccaaactagccttgcaaaggggtgatcaaatg
cttttacaggcattgcttcttctatctgaggggaaggtagacaaggtgccacatgaattg
cagaaggctaagacaatgctggatgaaatattgtctgttctgccacttgatggattatca
gaggcagcagtgcatgccacccggttgcactgcatctttgcattcgaagaaggccagaag
tttatagggaatcatgcgaaatccaaacaacaccagtcaattttaagttcatatgtcctc
tcaatgaagactgtaattaatagtgttcatcaagattgtagtccgtggttaaaggttctc
cgtgtttatcaaactattttaccatcctcattggttactttgaacctctgtatgaatttg
tcaagtttggctcgtaaacaaaaaaacacactgttggcaaatcgtctaaacaactatctc
agagatcagttatttagttgctctgaggagagataccatgagttcttgatctcaaatttg
caatatgaggaaatcctgctactgcattctcaaaataagtatgaagatgcttttgtgaaa
ctctggtcctttgtgtgccctttgatgctttcttctgtaccagtagtttctggttctagt
gatagttatttaaaagccaaagcatgcttgaaactctcaaattggctgagacgggattat
cctgacttgagtttagaaaatattgttctgaaaatgtgtgcagattttaatatggcagac
atctcttcgtttgccggaggtggaacctcctctgttgatgagaagctaagctctaaacca
agtgtaggggttattattgaggaaatggtgggtactgctactaaattgtctacgcatctt
tgttccaccatgggcaagtcatggatttcatatgcgtcttggtgtttcagtcaggcaaga
aacgctcttttggccccacatgaatctgtactccattcgtgttctttttctcctttactt
tcagctgaaattccaccagaaagattcaaattgactgaaggtgagattgtgagagtggaa
tctgcaattgtgcagctttttcaggataagggtgttgagaaaggcttaaaagatgaaggg
gatgtttggaatgtttgtcctgattctgtagaacatttgagaaatgagaaccttgtcaag
gctttgaggcagcaagtagttgatataattgaagctgcggctgggctgcatagtgaagag
aactctaatggtgaatgcctttccaccactgtagcttcacagttgcagctttgctttcta
cgcgcagatgttgacctagaagaaactcatttattatctgcagttgatagcttggttgat
gtttggtggtctctgaggaggagaagagtttctctctttgggcatgcagcacatggcttt
ataaaatacctatcatattcatctacaaagctttgcaatgatcagttgtatggtgctgat
agtgattcattgaaacaaaaaactggaagctatgtattaagggctacattatatgtccta
catattcttctcaattatggagtggagttaaaagatacacttgaacctggtctttctatg
gttcctttgttggcatggcaggaagtgacacctcaattgtttgcccggttgagtacacat
ccagagcaagtggtccggaagcaatttgagggcttactgattatgttggccaagctttct
ccttggtctatagtgtacccaacgctagttgatgtaaatgcttacgaagagaagccatct
caggaacttcagcatgtacttggttgtttgactgagctttacccaagattgattcaggat
gttcaactcatgataaatgagcttggaaatgtaactgttctttgggaggaactgtggctc
agcacacttcaagaccttcatggagcacatggcatactgatgacatcttcccaaattttt
ttcgctgatgtgatgaggcgcataaatgtgctgaaagaggaagttgcacggattgcagag
aatgccacactcagccaaagtgagaagaggaagataaatgcagctaaatactcagccatg
atgtctcccattgttatggcattggaacgccgtttatcttcaacttctcggaaacctgaa
actcctcatgaaatatggttccatgaggtgtatggggaacaactgaaatcagccatctta
aattttaagactcctccagcatctgcaactgctctaggagatgtttggctgccgtttgat
agcattgctgcatctttggcatctcgtcagagaaagtcatcagtttctttaagcaaagtt
gcaccacaactagctctattatcgtcttctgatgttccaatgcctggtcttgagaagcaa
gtcacagcatctgaaactgacggaggtcttgctgcaactctccagggaaatgttacgatc
gcctctttctctgaggatctgactatcttatcaactaagacaaagcctaagaaacttgtt
atacttggttcagatggaaagaagtatacttatctattgaaaggccgggaagatctccgc
cttgatgctagaatcatgcaattgctgcaagctgtaaatagttttcttcattcaactcca
gcaactcgtagtcagtcacttggcattcgctattattctgtgactccaatcagtggtcgg
gcgggtcttatccagtgggttgacaatgtaataagtatatatagtgtctttaagtcatgg
caaagccgtgttcagcttgcccaacctttaacagtggctgctggcaacacaaaaaattat
gttcctccacccattcccaggccaagcgatatgttctatgggaagatcataccagcgctc
aaagagaaaggcattaggagagtaatttcaagaagagattggcctcatgatgtaaagcgt
aaagttcttcttgatctgatgaaggaagttcctcgacagcttcttcatcaagaactttgg
tgtgctagtgaagggttcaaagccttcagctcaaaatggaaaaggtatgctggaagtgtt
gcagctatgagtatggtgggccacattctgggtctgggggatagacacttggataacatt
cttgtggatttctctagtggagaaatagtacatattgactacaatgtgtgttttgataaa
ggccaaagactaaaagttccagaaattgttcccttccgtcttacccagacaattgaagcc
gctttagggttgactggaatagagggtactttcagagcaaactgcgaagcagtgattagt
gttctgagaaaaaacaaagatatattcttgatgttacttgaggtttttgtgtgggatcca
cttatagagtggacgcgaggagattttcatgatgatgctgcaattggcggtgaagaaaga
aagggcatggagttagcagtgagcttgagtttatttgcatctagagtgcaagaaatccgt
gttcccttgcaggaacatcatgatcttttattggctgctgtacctgctgttgaatctgct
cttgagaggtttgctgatgttctaaatcaatatgagcttacctctgcacttttttatcgg
gctgaccaagagagatctaaccttattgtgcgtgagacgtctgcaaagacaattgtggct
gaagcaacttgtaattcagagaaagtccgtgcatcatttgaatttcaggctcgggaattt
gcccaagcaaaggctctaatagctgagaaagctcaagaagcaacgacttggatggaacaa
cacaggagggtccttgatgctttacgaagtaacctaatcccagaaataaatacctgcata
aagttgagtggtctgtcagatgctttatctcttacatccgctgttcttgttgctggggtt
ccattcactatagttcctgagcctactcaagtacagtgccatgatatagataaggaagtt
tctcagctaatagctgaactggatcagggactctcatctgcctcagttgctctccaagca
tatgctttagccttgcaaagaatcctacctctaaattatcttacaaccagtgcagtgcat
ggttgggcacaagttctgcaattgtctgctaatgctctttctgctgatatcctcactgtt
gctagaagacaggctgctgaactcattgtgaaaatacatggagataatattgtttctatc
aaatgcaatcatgaacaactttgtcttgaagtggaaaagtatgggtcggagatagaaaaa
gttgaaaaagagtgtgctgagttagttaactctattggctcagaaactgaatcaaaagct
aaggatcgttttttatctgttttcatgaagtatatgaagtctgcagatcttttaaggaaa
gaatatgctaattcttcatatcaatctggacaacttaaatatgatgggagaaaagatgcc
aggttacagggggctcaggaagagaacaaggaaagggtattatctgttctgaatatagct
gtaagcaatctgtatgaggaggtcaagcgtagggtccttgaaatttttagtgacactgtt
ggggtaatgagaggaagcaataggttgagatctgattttggaactattttctgtgagttt
gaagagcaagtagagaagtgtatacttgtagcggagtttgtgaatgaactgtggcaaatt
attggcaaggacatgtctaatgatgatgcagatgtagattattcaaaatatcatcctgaa
aaaaattgggcctctatcttcaaaaccagtttactttcctgtaagaacttggttgggcaa
atgactgaagttgttctaccagatgtaatgagatctgctatttcattcaattcagaagtt
atggatgcattcggatcaatctcacaaatcagggggtccatcgatacagcacttgaacag
ctcgtggaggttgaattagagagagcatccttggttgaactggaacagaactactttgtc
aaggttggtctcattactgagcagaaattggctcttgaagaagctgctgtgaagggtagg
gatcatctatcttgggaagaggcagaggagcttgcctcacaagaagaagcctgtagagca
gagctgaaccaactccatcaaacttggaaccatagggatatgcgaaattcctctctcatg
aagcaagaagctgatattagaaatgccttggtttcttcagagcgccattttcaatctgta
ataggtgctgaagagtttagggagccacatgttttgagaagcaaagcactattgaccaca
cttgttaagcccttttctgagttggaatcagttgataaaacattaacctctttcaggttt
gttgattctaaatcagatgggattcctaaattagcagagttgatgagttctgggcgctca
atatctgaatgtatctggaattttggcagccttttgagcagccactctttctttatttgg
aaaatgggtatagtggattcttttcttgattcatgcatacatgatgtggcatcatctgtt
gatcaaaatttaggatttgaccagctgttcaatgttgtgaagaaaaagcttgaactccaa
cttcaagaacatgttggtctatacttgaaagagtga
DBGET
integrated database retrieval system
