KEGG   Pistacia vera (pistachio): 116140379
Entry
116140379         CDS       T07386                                 
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1-like
  KO
K14962  COMPASS component SWD2
Organism
pvy  Pistacia vera (pistachio)
Pathway
pvy03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:pvy00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    116140379
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvy03019]
    116140379
   03036 Chromosome and associated proteins [BR:pvy03036]
    116140379
Messenger RNA biogenesis [BR:pvy03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     116140379
Chromosome and associated proteins [BR:pvy03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     116140379
    COMPASS/SET1 complex (yeast)
     116140379
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 WDR55 ANAPC4_WD40 Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_SPT8 Beta-prop_TEP1_C Beta-prop_NUP159_NUP214 WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_EIPR1 NBCH_WD40 eIF2A PQQ_3 Beta-prop_SCAP WD40_RFWD3 Ge1_WD40 Beta-prop_WDR35_TULP_N Utp8_b_propeller WD_LRWD1 Beta-prop_VPS8 PD40 Methyltransf_13
Other DBs
NCBI-GeneID: 116140379
NCBI-ProteinID: XP_031281886
LinkDB
Position
Unknown
AA seq 339 aa
MATTALTELDDKIVRSMAVGAVFSDFGGKINSLDFHRKDDLLVTASEDGSVRLYDIVNAK
LLKTTYHKKHGTDRICFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERV
VSLCMSPVNDSFMSGSVDHSVRMWDLRVNACQGILHLRGRPTVAYDQQGLVFAVAMEGGA
IKLFDSRSYDKGPFDTFLVGGDRAEVCDIKFSNDGKSMLLMTTNNNIYVLDAYGGEKRFA
VNLEPSPNETMEATFSPDGQYVVSGSGDGTIHAWDINMRNEVACWNAHTGVSSCLKWAPR
RVMFVAASSVLSFWIPNPDDPASGEPQSQPISQPTPSFS
NT seq 1020 nt   +upstreamnt  +downstreamnt
atggcgacgacggcgctcacagaactcgatgacaaaattgtgcgcagcatggccgtaggc
gcagttttctcagactttggtgggaagataaattcacttgactttcatcggaaagacgat
ttattggtcacggctagcgaggatggctcggtccgtctatacgacatcgttaatgctaag
ttgctcaagaccacatatcataagaaacatggcactgatcgtatttgctttacccatcat
ccaagctctgttatttgctcgacaaaatataatttggattccactggagaatctttgcgg
tatctgtcaatgtatgataatcgaattctccgctactttaaaggccataaagagagggtt
gtttccctctgcatgtctccagtaaatgatagcttcatgtctggttctgttgaccacagt
gtcagaatgtgggatcttcgtgtaaacgcttgccagggaattctacatctacgtggtaga
cctacagttgcatatgatcaacaaggcttggtctttgccgtggcaatggaaggtggtgct
ataaaattgtttgattcacgttcttatgacaagggcccctttgacaccttcttagtaggt
ggagatagagcagaggtttgtgatatcaaattcagcaacgatggcaaatcaatgctcttg
atgaccacaaataacaacatttatgttcttgatgcatatggaggagagaagcggttcgct
gtgaatttggagccatccccaaatgaaactatggaagcaactttttccccagatggccag
tatgtggtctcagggtcaggggatggaacaattcatgcctgggatatcaacatgagaaat
gaggtggcatgttggaatgcccacactggggtatcttcatgtttgaaatgggctccccgt
cgcgtgatgtttgttgctgcctcttctgtactctcgttttggatacccaaccccgatgat
cccgcttctggggaacctcaatctcaaccaatttcacaacctaccccttctttctcttaa

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