Pistacia vera (pistachio): 116143133
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Entry
116143133 CDS
T07386
Name
(RefSeq) protein CHROMATIN REMODELING 8 isoform X1
KO
K10841
DNA excision repair protein ERCC-6
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
116143133
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pvy03036
]
116143133
03400 DNA repair and recombination proteins [BR:
pvy03400
]
116143133
Chromosome and associated proteins [BR:
pvy03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
116143133
DNA repair and recombination proteins [BR:
pvy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
116143133
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HDA2-3
ResIII
Motif
Other DBs
NCBI-GeneID:
116143133
NCBI-ProteinID:
XP_031284408
LinkDB
All DBs
Position
Unknown
AA seq
1225 aa
AA seq
DB search
MEEEEDRILLSSLGVTSANPEDIERDVIAAAVENDAGNSNEAEGSKEEEPRVKLERIDPS
STSQEKLYNKLRAVEFEINAVALTVDHVRRVADEDQATDVDDGTEKVDKEDDKCVVQASA
NGLTLQHALATDRLESLKETKAQLEQELSIFQNEKTSKGIKHDRLIQDLVKEEFRPKKKA
KEVLKPGRKQSKRQKTVSFDDDADFDSVLDAASAGFVETKRDELVRKGILTPFHKLKGFE
RCLQQPGPSNRHNVTMEEEDKSSDLFSASVDRAVRSMSEAAQTRPTTKLLDPEEIPKLDG
PTHPFQRLKTPFRIPPSQESEAEKKKSTKRKKKRPLPNKKWRNHISREETGVEVNDGRDN
FVTSSYEGEKQEDVEDTDDSEPPFVTLEGGLKIPESIFSDLFDYQKVGVQWLWELHCQRA
GGIIGDEMGLGKTIQVLSFLGALHFSSMYKPSIVVCPVTLLRQWKREAQKWYPSFRVEIL
HDSAQDPGNRAKSSHSDCDSEGSLDSDYEEKLSSKNTKKWDFLINRVLRSESGLLITTYE
QLRLLGEKLLDIEWGYAILDEGHRIRNPNAEITLVCKQLQTVHRIIMTGAPIQNKLSELW
SLFDFVFPGKLGVLPVFEAEFAVPIAVGGYANASPLQVSTAYRCAVILRDLIMPYLLRRM
KADVNAHLPKKTEHVLFCSLTAEQRSVYRAFLASSEVEQILDGRKNSLYGIDVMRKICNH
PDLLEREHSCQNPDYGNPERSGKMKVVAEVLKVWKEQGHRVLLFSQTQQMLDILESFLVS
NGYDYRRMDGVTPVKQRMALIDEFNNSSDVFVFILTTKVGGLGTNLTGANRVIIFDPDWN
PSTDMQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFK
ARDMKDLFTFNDDGDGGSTETSNIFSQLSEDVNLVGVQKEKKLDKQKRKKDATNADDGAS
YKGNNLEIGSSRRKGKEKADNNDGEVDEETNILRSLFDAQGIHSAVNHDIIMNAHDEEKL
RLQEQASQVAQRAVEALRLSRMLRSRDDISVPTWTGKSGTAGAPSSVRQKFGSTVNSQLI
KPSDDSSSSKTSKFSGFAAGASAGKALSSSELLAKIRGNQEKAAAAGLGHKVASSSANGA
RSTDVGTTCSSHNISGVQPEVLIRQICTFIQEEGGSTDSASIVQHFRNRIPPKDLPLFKN
LLKEIAILKKDRNGSCWLLKPEFQQ
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagaagaggacaggattttgctgagtagtttgggtgttacatcggcaaatcct
gaagatatcgaacgtgacgtaatagctgctgcggtggaaaatgatgctggcaacagtaac
gaagccgaagggagcaaggaggaggagcctcgtgttaaattggaaaggattgatccgtcc
tccaccagtcaagagaaactttacaataagttaagggctgtagaatttgaaataaatgct
gttgctttgactgttgatcatgtgagaagggttgcagatgaagaccaagctactgatgtt
gatgatggcacggaaaaagtggataaagaggatgataagtgtgttgttcaggcatctgcc
aatggtttgactcttcagcatgccctagctactgatcgacttgaaagcctcaaggaaact
aaggctcaacttgagcaggaactttcaatttttcaaaacgaaaagacttccaagggtatt
aagcatgatagacttattcaagacttggtaaaggaagaattcagacccaagaagaaggca
aaagaagttctgaaaccaggcagaaaacagtcaaaacgtcagaaaacagtttcatttgat
gatgatgctgattttgattcggtattggatgcagcatctgcaggatttgttgaaacaaaa
agggatgaattggttcgcaaaggaattttaactccctttcacaagcttaagggctttgaa
cgttgtcttcaacaaccaggaccatctaataggcacaatgtaaccatggaagaagaagac
aaaagtagtgatcttttctcagccagtgttgacagggctgttcggtcaatgtcagaagct
gcacaaactcgtccaacaaccaagctacttgatccagaagaaattcccaagcttgatgga
ccgacccatcctttccagaggctaaaaacaccttttagaattcccccttctcaggaaagt
gaggctgaaaagaaaaaaagtacaaaaaggaaaaagaaacgacctttgcctaacaagaag
tggaggaatcacatttctcgtgaagaaactggtgttgaagtgaatgatggaagggataac
tttgtcacttccagttatgagggagaaaagcaagaggatgtggaggatacagatgatagt
gaacctccttttgtgacacttgaaggtgggctcaaaattccagaatccatttttagtgat
ctttttgattatcaaaaggtgggagtgcagtggctatgggaattgcattgccaaagagca
ggtggaattattggagatgaaatgggtcttggcaagactatccaagtgttatcctttctt
ggggcattgcatttcagtagtatgtataaaccaagcattgttgtctgcccagttacacta
ttgcgacagtggaaaagggaagcacaaaaatggtatccaagcttccgtgtggagatattg
catgattctgctcaggatcctggtaacagagccaaatcttcccatagtgattgcgatagt
gaaggttcattggacagtgattatgaggaaaaattgtcttctaaaaacaccaaaaaatgg
gatttcttgataaatcgagttttaagatcagagtctgggttgcttattactacgtacgag
caactacgcttgttaggggaaaagttgcttgatattgaatggggttatgccattctggat
gaaggacacagaattcgaaatcctaatgctgaaatcactctggtttgcaaacaactacag
acagttcaccggataataatgaccggtgcaccaattcaaaataagctttcagaattgtgg
tccttgtttgattttgttttccctggaaagttgggggttttgcctgtttttgaagcagaa
tttgcagttccaatagctgtgggtggttatgccaatgcttcacctttacaagtatcgaca
gcctacagatgtgctgtgatcctacgagacttgatcatgccttatcttctccggcgtatg
aaagctgatgtgaatgcccaccttcccaaaaaaactgagcatgttctcttctgcagtctc
actgcagagcaacggtcggtatatcgagcatttcttgctagctctgaggtggaacagata
ttggatgggagaaaaaattctttatatggaattgatgtgatgcgcaagatatgcaaccac
cctgatctgcttgagagagagcattcctgccagaacccagattacgggaatcctgaacgt
agtgggaaaatgaaagttgttgctgaagtgctgaaggtttggaaggagcagggtcatcgt
gttcttcttttttctcaaactcaacagatgcttgatattcttgagagtttcttggtttct
aatggttatgactacaggagaatggatggtgttactcctgtcaagcagagaatggcttta
atagatgagttcaataactctagtgatgtgtttgtattcattctaactacaaaagttggt
ggtttgggaacaaatttgactggtgcaaacagggtgatcatctttgaccctgattggaac
ccttcaactgatatgcaggcaagggagcgtgcttggcgaattggtcagaaacgggatgta
actgtttatagattgattacacgtggaactattgaggagaaggtgtatcaccgtcagata
tacaagcattttcttactaataagatattgaagaacccacagcagaaaaggtttttcaag
gctcgagatatgaaggatcttttcacttttaatgatgatggggatggtgggtcaactgaa
acttctaatattttcagtcagttgtctgaagatgtgaatcttgttggggttcagaaggaa
aagaagctggataagcagaaacgtaaaaaagatgcaacaaatgctgatgatggtgcaagt
tataaaggaaacaacttagagattggatcttccagaagaaaagggaaagaaaaagctgat
aataatgatggtgaagtggatgaagaaacaaatatcttaaggagtctttttgatgcacaa
ggcatacatagtgctgtgaaccatgacataatcatgaatgcccatgatgaagagaagctg
aggctgcaggagcaagcttcgcaagttgcacaaagagcagtagaagcgttgcgcctgtcc
agaatgcttcgaagtcgtgacgacatatctgtcccgacgtggacggggaaatctggaact
gctggtgcaccatcatctgttcgccagaaatttggttcaactgtgaattctcagttgatt
aagccctcagatgactcatccagcagcaaaacaagcaagtttagtggctttgcagctggg
gcatctgcgggaaaggcattatcttcatctgagttactggctaaaattcgaggaaaccaa
gaaaaggcagctgccgctggacttgggcataaggtggcctcaagttctgctaatggagca
agatctacagatgttgggaccacatgttcatctcacaatatatctggtgtgcagcctgag
gtattgattcgtcaaatatgtacttttatacaagaagaaggtggaagcacggattcagcc
agcatagtccagcattttaggaataggatacctccaaaggatcttcctttatttaaaaat
cttttgaaggaaatagctatccttaagaaggaccgaaatggatcatgttggctactgaag
cctgagtttcaacaatag
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