Pistacia vera (pistachio): 116144491
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Entry
116144491 CDS
T07386
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 50
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
pvy
Pistacia vera (pistachio)
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvy03041
]
116144491
03009 Ribosome biogenesis [BR:
pvy03009
]
116144491
Enzymes [BR:
pvy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116144491
Spliceosome [BR:
pvy03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
116144491
Ribosome biogenesis [BR:
pvy03009
]
Eukaryotic type
90S particles
Helicases
116144491
Pre-60S particles
116144491
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Helicase_C_2
SNF2-rel_dom
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
116144491
NCBI-ProteinID:
XP_031285793
LinkDB
All DBs
Position
Unknown
AA seq
666 aa
AA seq
DB search
MMVVKAPLPFLIVPCPSPSSSSSRNSNAGFMKKCVSNNRVLLVSSSYSRKPLETAGAYQL
INDETGEKLIVWGGADDEPSIPPNHLLHSSNWNPNPSQHTADNNSSRQSTASFSRLKAQR
VRALVNKTSSTKKEVRKPDNQHSQSKRHSLGKNKTVNALKEEQRFSTADKKQITGTGQHM
DDSLVPVECGVSDNQIVPARLHKSDAQGDEAGILVPRASNAYLRGWGNGGSIHNLKSESK
GLPKQRHKFSTDTEFFSRKSFKELGCTDYMIESLKRQHFLRPSRIQAMAFTPAIAGKSCI
LADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSRSPRVIIMVPTAELASQVLNNCRSMS
KFGVPFRSMIVTGGFRQRTQLENLQQGVDVLIATPGRFMFLIKQEILQLSNLKCAVLDEV
DILFNDDDFEVALQTLISSAPVTSQYLFVTATLPVAVYNKLVEVFPDCEVIMGPSMHRIS
PGLEEVLVDCSGDNETEKTQETAFLNKKSALLQLVEEIPVSKTIVFCNKIETCRKVENIL
KRFDRKGTQVRVLPFHAALEQESRLANMKEFSNRQSKEECLFLVCTDRASRGMDFAGVDH
VILFDFPRDPSEYVRRVGRTARGAGGKGRAFIFVVGKQVSLARKIMERNRKGHPLHDVPS
AFELVG
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgatggtggtaaaagctcctcttcctttcctgattgttccttgtccgtctccttcctct
tcgtcgtcaaggaacagcaacgccggctttatgaagaaatgtgtcagcaataacagagtt
cttttagttagcagtagttacagtcgtaagcccttggaaactgcgggtgcttatcagctt
atcaacgatgagactggcgagaaattgatagtttggggtggagctgacgatgagccttct
atccctcctaaccatctactccactcctctaattggaaccctaacccctctcaacacact
gcagacaataattcttcgagacaatctactgctagcttttcaagattgaaagctcagaga
gtaagagctctcgtcaataaaacttcttcgacaaaaaaagaagttaggaaacctgacaac
caacattcgcaatctaaacgtcactccttggggaagaataagactgtaaatgccctcaaa
gaagagcaaagattttcaacagcagataaaaaacaaattactgggacaggacaacacatg
gacgattctcttgtacctgtggaatgtggtgtctcagataatcaaattgtaccggctaga
cttcataagtctgatgcccagggagatgaagctgggattttagttcctagagcctctaat
gcttacttgagaggatggggcaatggaggatccattcataacctcaaatctgaatcaaaa
ggcctcccaaagcagcggcataaattctccactgatacagagttttttagtcgaaaatcc
tttaaagaattgggatgcactgattatatgatcgaatccttaaaacgacaacatttcctg
cgtccttcgcgaattcaggccatggcatttactcctgctattgcaggaaagagctgtatt
ttagctgatcaaagtggatcagggaagacactggcatatctcctacctgtgattcaacgt
cttaggcaagaagaactccaaggacttagcaaatccacttcaagaagtcctcgagtaatt
atcatggtaccaaccgctgagttggcttctcaggttctgaataattgccgttcaatgtct
aaatttggagttccattccggtctatgattgtgaccggtggttttcgacagagaactcag
ttagaaaatctccagcagggtgttgatgttttaatagccacacctggtcgtttcatgttc
cttattaaacaagaaatcttgcagctcagcaatcttaaatgtgctgtgttggatgaggtg
gatatactctttaatgatgatgatttcgaagtagcactacaaactttgataagctctgca
cctgttacctcacaatatctatttgtgacagcaactttaccagtagctgtatataacaag
ctagttgaagtttttcctgactgtgaagttatcatgggacccagcatgcatcggataagc
ccaggtcttgaagaggttcttgtagattgcagtggagataatgaaacggagaaaactcaa
gaaacggcttttctcaacaagaaatctgctcttctgcagctggttgaggaaattccagtt
tcaaagacaattgttttctgtaacaagattgaaacatgcagaaaagttgagaatatattg
aaacgctttgatagaaaaggaactcaagtgcgggttctaccatttcatgctgcattggag
caagagtcccggctagcaaatatgaaggagttcagtaataggcagtctaaagaagaatgt
ttgtttttggtttgcactgatagagcatcacgtggaatggactttgctggtgtggatcat
gtcatactctttgacttcccacgtgatccaagtgaatatgtgcgtcgtgttggaagaact
gctagaggtgctggaggaaagggaagggcatttatatttgtggttgggaagcaagtttcg
cttgcacgaaagataatggaaagaaatcggaagggtcatccactgcatgatgtgccgtca
gcatttgagctagtgggttga
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