Pistacia vera (pistachio): 116146106
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Entry
116146106 CDS
T07386
Name
(RefSeq) putative CCR4-associated factor 1 homolog 8
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116146106
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvy03019
]
116146106
Messenger RNA biogenesis [BR:
pvy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116146106
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
116146106
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
116146106
NCBI-ProteinID:
XP_031287380
LinkDB
All DBs
Position
Unknown
AA seq
298 aa
AA seq
DB search
MEEIREVWGSNVDTELAFFDQCLNRFNFLSFDTEFPGFLRNTPRDASECLRYNDLKFNVD
LTKIIQLGITLSDGNGIICSTWEFNFSDFDPEKDAHSEESIDFLRKNGLDIEKIRRDGLS
SEVFVPKFMDILSRHRNIKWVSFHGLYDFAYVLKLLTDKPMPRTVFEFVEVASMVFGCVF
DIKFMAKHCTGLLGGEIGLSRAAKILGVERKGAAHNAGSDSLLTASVFARMKMMPGFQEG
VFTGCLYGISTRIGRRMKMVVPRYSQPMILPPFRPRPAIIFCGVPVIRPVPNIIIKNV
NT seq
897 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaatcagagaagtttggggttcgaatgttgatacagagctggcgttcttcgat
cagtgtctaaaccgattcaatttcctttctttcgacacagagtttccgggtttccttcga
aacactcccagagatgcgtcagagtgtctgcgctacaatgacttgaagtttaatgtcgat
ttgacgaagattatccaactgggtatcacactttcagatggtaacggtattatctgttca
acttgggagttcaatttcagtgattttgatccggagaaagatgcacattctgaagaatcg
attgatttcttgaggaaaaacggccttgatattgagaaaatcagaagggatgggttgtca
agcgaagtttttgtaccaaaattcatggacattctgtcacggcacagaaacataaagtgg
gtgtctttccatggcctctatgattttgcctatgttctgaaactgttgacggacaaaccc
atgccaagaactgtgtttgagtttgttgaggtggcatccatggtgttcgggtgcgtgttt
gatataaaattcatggcaaaacactgtactgggttattgggtggtgagattggattgagt
agagcggcgaagatcttaggcgtggagaggaagggcgcggctcataacgctggttctgac
agtctgctaaccgcttctgtttttgcaaggatgaagatgatgccggggtttcaagaagga
gtttttactggatgtttatacggtatcagtactcgtattggaagacgtatgaagatggtt
gttcctcgctattctcaacctatgattcttccccccttcaggcctcgtccagcaattatc
ttctgtggagtacctgttattcgtcctgtacccaatattatcataaagaatgtttga
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