Pistacia vera (pistachio): 116146891
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Entry
116146891 CDS
T07386
Name
(RefSeq) DNA mismatch repair protein MSH2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
116146891
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvy03400
]
116146891
DNA repair and recombination proteins [BR:
pvy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
116146891
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
Motif
Other DBs
NCBI-GeneID:
116146891
NCBI-ProteinID:
XP_031288188
LinkDB
All DBs
Position
Unknown
AA seq
875 aa
AA seq
DB search
MRQLGSGSDALSSISVIKNMFETIARDVLLERTDHTLELYEGSGSNWKLVKSGTPGNLGS
FEDVLFANNEMQDSPVVVALCPNFRENGCTVGLGYIDLTKRVLGVAEFLDDSHFTNLESS
LVALGCKECLLPIESGKSSECRPLIDALTRCGVMLTERKKNEFKTRDLVQDLGRLVKGSI
EPVRDLISCFEFAPGSLGALLSYAELLADESNYGSYSIRKYNLESYMRLDSAAMRALNVM
ESKTDANKNFSLFGLLNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDLVQAFVEDTALR
QDLRQHLKRISDIERLMHNLGRRRAGLQHIVKLYQSSIRLPYIRNALQQYDGQFSLLIKE
RYLDPLEVLTDDDHLNKFIGLVEASVDLDQLENGEYMISSSYDPALSALKDEQESLDCQI
HSLHKQTAYDLDLPLDKALKLDKGTQFGHVFRITKKEEPKIRKKLSTQFIVLETRKDGVK
FTNTKLKKLGDQYQKVLDEYKNCQKELVNRVVQTAASFSEVFESLAGLLSELDVLLSFAD
LASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGP
NMGGKSTFIRQIGVNVLMAQVGSFVPCDKASISVRDCIFARVGAGDCQLRGVSTFMQEML
ETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHLVEVIRAPTLFATHFHELTAL
ADENANHELHTKQIGGVANYHVSAHIDLSSRKLTMLYKVEPGACDQSFGIHVAEFANFPE
SVVALAREKAAELEDFSPSAVTSNDSKEEVGSKRKRVSDPSDMSKGAARAHEFLKKFSDL
PLEKMDLQQALQQVKKMKDDLEKDAVDCDWLQQFL
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgcgacaattgggcagtggatctgatgctctttccagtataagtgttattaagaacatg
tttgaaacaattgctcgtgatgttcttctggagagaacagaccacactcttgagctgtat
gagggtagtggctcaaattggaaactggtgaaaagtggaactcctggtaatctaggaagt
tttgaagatgttctgtttgctaacaatgagatgcaggattcccctgtcgtagttgcacta
tgtccaaacttccgtgaaaatggatgcactgttgggttgggttatattgatttaactaag
agagtacttggagtggctgaatttcttgatgatagccactttacaaatttggaatcatct
ttggttgctcttggttgtaaggaatgccttttgcctatagagtctggaaagtctagtgag
tgtagacctctgattgatgctttgaccagatgcggtgtgatgttaactgagagaaagaaa
aatgagtttaaaacaagggatttagtgcaggatcttggtaggctggttaaaggttccatt
gaaccagttcgagatttgatttcttgttttgaatttgctcctggttctttaggggcgtta
ttgtcttacgctgagttacttgcagatgagagcaattatggaagttattcaattcgaaag
tacaatctagaaagctacatgaggttggattctgctgctatgagggcactaaatgtcatg
gaaagcaaaactgatgcaaacaagaatttcagtttgtttggtctcctgaatagaacctgt
actgctgggatgggaaagcgattacttcatatgtggttaaagcagcctttattagatgtg
aatgaaataaatgccaggctggacctggtacaagcatttgttgaagatactgcacttcgc
caagatctgaggcagcatctgaaaagaatctctgatatagaacgactgatgcataacctt
gggaggagaagagctggtctgcagcatatagtaaaactttatcagtcaagtatccgactt
ccatacattagaaatgccctgcaacagtatgatggacagttttcattgttgatcaaggaa
aggtatttagatccgctggaggttttaactgatgatgatcatttgaataagttcattggt
ctggtagaagcttctgttgaccttgatcaacttgaaaatggagaatacatgatctcatca
agttatgatcctgctttatcagcgctaaaagatgagcaggagtctctggattgccaaata
cacagtttgcataaacaaacagcttatgaccttgatttgcctctagataaggccttgaag
ttagataaaggcacacagtttggacatgtcttcagaattacaaagaaggaagaaccaaaa
ataaggaaaaagctcagtactcaatttattgtcctcgaaacacggaaagatggagtgaaa
ttcactaatacaaagcttaaaaaattaggggaccagtaccaaaaagttcttgacgagtac
aagaattgtcaaaaagagcttgttaaccgagttgttcaaactgcagcaagtttctctgag
gtattcgagtctttggctggcttgctttcggaattggacgtcttgctcagttttgctgat
ttagcttccagttgtccaactccatacacaagaccagacatcaatccacccgatgtggga
gatattatattagaagggagtagacacccttgtgtcgaagcacaagattgggtgaatttt
ataccaaatgattgtaaacttatcagaggaaagagttggtttcagatcatcactggacct
aacatgggtggaaagtccacatttattcggcagattggtgtaaatgttttgatggcacaa
gttggttcttttgttccttgtgacaaagctagcatttctgtacgtgattgcatttttgct
cgtgttggtgctggtgactgccaactacgtggagtttctacctttatgcaagaaatgctt
gaaactgcatcaatattgaagggagctaccgataagtcattgataatcattgatgaattg
ggacgtgggacatcaacttatgatggatttggtttagcgtgggctatatgtgagcacctg
gttgaagtgattagagcaccgactttgtttgcaacccacttccatgaattgactgcatta
gctgatgaaaatgccaatcatgaactccatacaaagcaaattggtggtgtggccaactat
catgtcagtgcacatattgacttgtcaagtcgcaagttgactatgttgtacaaggttgaa
ccaggggcttgtgatcaaagttttggtattcatgttgcagaatttgcaaattttcctgaa
agtgttgttgcccttgctagagaaaaagctgctgaattggaagatttctcgccttctgca
gtaacttcaaatgattctaaagaggaggtgggatccaaaagaaagagagtgagcgatccc
agtgacatgtccaaaggtgcagcccgggctcacgaatttctgaagaaattctctgatttg
ccattagagaaaatggacttgcagcaggctctgcaacaagtaaaaaagatgaaggatgac
ttggagaaagatgcagtagactgcgactggctccagcaattcctctag
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