Pistacia vera (pistachio): 116147018
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Entry
116147018 CDS
T07386
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03020
RNA polymerase
pvy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
116147018
09124 Replication and repair
03420 Nucleotide excision repair
116147018
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvy03021
]
116147018
03400 DNA repair and recombination proteins [BR:
pvy03400
]
116147018
Enzymes [BR:
pvy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
116147018
Transcription machinery [BR:
pvy03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
116147018
DNA repair and recombination proteins [BR:
pvy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
116147018
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Zn_ribbon_RPB9
Motif
Other DBs
NCBI-GeneID:
116147018
NCBI-ProteinID:
XP_031288309
LinkDB
All DBs
Position
Unknown
AA seq
1193 aa
AA seq
DB search
MDGEEEFDHDPQEENEDEDEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVD
ESADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNL
TYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTEL
GECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPS
TMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGYVADKDILEHICYDFSDT
QMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGTGD
YCETKKAYYFGYIINRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV
RGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYA
STLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS
AAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTLRRLRRRVDV
NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIHALQQRETPEDGGWHDL
VAKGFIEYIDTEEEETTMISMTINDLVQARIHPEEAYSDTYTHCEIHPSLILGVCASIIP
FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL
PAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP
DRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDEAQGQASRYTRRDHSI
SLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM
PWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL
HKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPA
EGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSF
ECRSCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEPPKTSKDVKKKGA
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atggatggcgaagaagagttcgaccacgacccacaggaggagaatgaagatgaagatgag
atcacgcaggaggatgcgtgggctgttatttcagcttatttcgaagagaagggtttggtt
cgccaacaactcgattccttcgatgaatttattcagaacactatgcaagaaattgtcgac
gaatcggcggacatcgagattcgccccgaatcacaacataaccctggccaccagtctgat
tttgctgagaccatctataagatcagctttggacagatatatttgagtaagcctatgatg
actgaatccgatggagaaacagctactttgtttcccaaagctgcaagattgaggaatctg
acgtactctgccccgttgtatgtggatgtcactaagagagttataaagaaagggcatgat
ggtgaagaagtcaccgaaactcaagatttcactaaagttttcattgggaaggttcctata
atgcttcggtcaagttattgcacattatatcagaactcagagaaggatttgacagagctt
ggggagtgtccttatgatcaaggtggatattttattatcaatggtagtgaaaaggttcta
attgctcaagagaagatgagcaccaatcatgtctatgtgttcaaaaagaggcagcctaac
aagtatgcctatgtggcggaagttcggtctatggcagagtcacaaaatagaccgcccagc
actatgtttgtgcggatgctttctcggactagtgctaaagggggctcctctgggcagtac
attcgtgctacacttccatacattcgaactgaaattcctatcattattgtattccgggct
ttggggtacgttgctgacaaagatatattagagcacatatgctatgacttctccgatact
caaatgatggagttgctccggccttccctggaggaagcatttgtcattcaaaaccaacag
gttgcactagactacatagggaaaagaggagcgactgtcggtgtaactagggaaaagagg
attaagtatgccaaagagatccttcaaaaagaaatgcttcctcatgttggtacaggagat
tattgtgaaacaaagaaagcttattattttggatatattattaatcggcttctactttgt
gcacttggccggagggctgaagatgatagggatcattatggcaacaaaaggctggacctt
gctggtcctttacttggaggcctgttcagaatgctatttagaaagttaaccagggatgtc
agaggctacgtccagaagtgtgttgataacggaaaggatgttaacctgcaatttgctatc
aaagcaaaaaccattaccagtggtctgaaatactcacttgcaactggcaactggggtcaa
gcaaatgcagctggtacaagggctggagtgtcacaggtgttaaatcgtctaacatatgcc
tctacgttgtcgcatttgcgaagattaaattctccaatagggcgtgaaggaaaattggcc
aaacccaggcagttgcacaattcacaatggggaatgatgtgtccagctgaaacacctgaa
ggacaagcttgtggactggtaaagaacctcgcattaatggtttacattacagttggatcg
gctgcctatcctattttggagtttttagaagaatggggaactgagaattttgaggaaatt
tctccagcggttattcctcaagctacaaaaattttcgtaaatggttgctgggttggtatc
caccgtgatccagatatgttggtgaaaacattgagaagattaaggagacgggttgatgtc
aatactgaagttggggttgttagagacattcgtttgaaagagttgcgtatatatactgac
tatggacgttgcagtcgtccactattcattgtggaaaaacaaaggcttctcataaagaag
cgagacattcatgcactgcagcagagggaaaccccagaagatggtggttggcatgatctt
gtagcaaagggatttatagaatatattgacacagaagaagaagagaccacaatgatttct
atgaccattaatgatcttgtacaagccagaattcatccagaagaggcctattctgataca
tacacacattgtgagatccacccatccttaattttgggtgtttgtgcttcaattatacca
tttcctgatcataatcagtcccctcgtaatacatatcagtctgctatgggtaagcaagcc
atgggaatctatgtcacaaactaccaatttcgtatggatactttggcctatgttctctat
tatcctcaaaaaccactcgttactacacgagccatggaacacctccactttaggcagctt
cctgctggcattaatgctattgttgcaattgcttgttattctgggtacaaccaagaagat
tctgttattatgaatcaatcatccattgatcgtgggttctttagatcacttttcttccgt
tcatatagagatgaggagaaaaagatgggcactcttgtaaaagaagattttgggcgtcca
gatagatctaataccatgggcatgcggcatggttcttatgataaattggatgatgatggt
cttgcacctcctggcacaagagtctctggtgaggatgtgatcattggaaagacaacacct
attgctcaggatgaagctcagggtcaggcatcacgttatacaagacgtgatcatagcata
agcttacgtcacagtgaaacagggatagtggaccaagttttactgacaacaaacgcagat
gggttgaggtttgtgaaagtaagggtgcgatcagttcgaataccccagattggagacaaa
tttagcagtaggcatggtcagaagggaacagtgggcatgacttatacacaagaagacatg
ccatggacagtggaaggcatcacccctgatatcattgtgaatccacacgctattccttct
cgaatgaccattggtcagctgatcgagtgtattatggggaaggttgcggctcacatggga
aaggaaggtgatgccacaccttttacagatgtcaccgttgacaatatcagtaaagctctt
cacaaatgtggatatcaaatgcgtgggtttgagacaatgtataatggtcacacaggcagg
cggctcactgctatgatattcctaggccccacttattaccaaagattgaagcacatggtt
gatgataagatacattctcgtgggcggggacctgtacagattctgacaaggcagcctgct
gagggacggtctcgtgatggtggcctcaggtttggtgaaatggaacgagattgtatgatt
gctcatggtgccgctcactttctcaaggagaggttgttcgaccaaagtgatgcatatagg
gtccatgtctgtgagaaatgtgggttgatagctatcgcaaatctgaagaagaattctttt
gagtgcagaagttgcaagaacaaaactgacattgttcaggttcacattccttatgcatgt
aagttgctcttccaagagcttatggccatggccattgcaccaagaatgctgacgaaggag
ccgccaaagacatccaaagacgtgaagaagaaaggtgcttga
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integrated database retrieval system
