Pectobacterium versatile: OA04_06870
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Entry
OA04_06870 CDS
T07772
Symbol
deaD
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pvz
Pectobacterium versatile
Pathway
pvz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OA04_06870 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvz03019
]
OA04_06870 (deaD)
03009 Ribosome biogenesis [BR:
pvz03009
]
OA04_06870 (deaD)
Enzymes [BR:
pvz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OA04_06870 (deaD)
Messenger RNA biogenesis [BR:
pvz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OA04_06870 (deaD)
Ribosome biogenesis [BR:
pvz03009
]
Prokaryotic type
rRNA helicases
OA04_06870 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_C
CMS1
Cas3-like_C_2
AAA_22
DRTGG
Motif
Other DBs
NCBI-ProteinID:
AVT57334
LinkDB
All DBs
Position
738698..740614
Genome browser
AA seq
638 aa
AA seq
DB search
MTDLFTSFSDLGLSAPIINALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF
ALPLLNNLKPELKAPQMLVLAPTRELAVQVAEACNDFAKHMHGVNVVALYGGQRYDVQLR
ALRGGAQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAA
HQTALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWTVQGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNV
ERTMKLTIPEVELPNAELLGQRRLAKFAAKVQQQLESSDLDMYRALLTKLQPQEELDVET
LAAALLKMAQGERPLILPPDPAFRPRREYRDRDESRSDSRGDRRREPRDARDSRDSQPRD
GDRPQRRERRDAGEMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGSHSTI
ELPKGMPGDLLSHFTRTRILNKPMNMQLLGDAVAQPERRGGGRPAGAGGERRDGAAPRRS
FGGGERREGNANGGERRERSFNRDAAAPRAPRRRPADA
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atgactgatttatttacttctttttccgatttggggctgtctgctcctattattaacgcc
ctgaccgatctgggctatgaaaaaccatcgccaattcaggctgaatgtattccccacctg
ctgaacggtcgcgatgtgctgggtatggcacagaccggcagtggtaaaactgcggctttt
gctctgccattactcaataatttaaagcctgagttaaaagcgccgcagatgctggtgttg
gctccaacccgcgaactggctgttcaggttgctgaagcctgtaatgattttgccaagcat
atgcatggcgttaacgtcgttgccctgtacggtggccagcgttatgacgtgcagctgcgc
gctttgcgtggtggagcacagatcgttgttggtacgccgggccgtctgttggatcacctg
aagcgtggtacgctggatctgtccaacctgagtggtttggtgctggacgaagccgatgag
atgctgcgtatgggcttcatcgaagatgttgaaaacatcatggctcagatccctgctgcg
catcagactgcgctgttctctgcaaccatgccggaagcgattcgccgcattacgcgtcgt
ttcatgaaagatccgcaagaagttcgcattcaatcaagcgtgactacgcgtccagacatc
agccagagctactggacggtgcagggtatgcgtaaaaatgaagcgctggtacgtttcctc
gaagcggaagattttgatgcggcgattattttcgttcgtaccaaaaacgcgacgctggaa
gtggctgaagcactggaacgtagtggttacaacagtgctgcgctgaacggtgacatgaat
caggcgctgcgcgaacaaacgctggagcgtctgaaagatggtcgtctggatatcctgatc
gcaaccgacgttgcggcacgtggtctggacgttgagcgtattagcctggtcgtcaactac
gatatcccaatggattccgagtcttacgtccaccgtattggtcgtactggccgtgcaggt
cgtgcgggtcgcgcactgctgtttgttgaaaaccgtgaacgccgcctgctgcgcaacgtt
gaacgcacaatgaagctgacgattcctgaagtggaattgccaaatgcagaattgctgggt
caacgccgtctggctaaatttgccgctaaagtacagcaacagctggaaagcagcgatctg
gatatgtaccgtgcgctgttgacgaaattgcaaccgcaggaagagttggatgttgaaacg
ctggctgctgcgctgctgaaaatggcgcaaggcgaacgtcctctgattctgccgccagat
ccggcattccgtccgcgtcgtgaataccgcgatcgtgatgagtctcgtagtgattcacgt
ggcgatcgtcgtcgtgaaccccgcgatgctcgcgattcccgtgattcccaaccccgtgat
ggtgaccgtccacagcgtcgtgagcgtcgtgatgcgggtgagatgcagctgtatcgtatc
gaagtgggtcgtgatgacggcgttgaagttcgccacattgttggtgctatcgccaacgaa
ggtgatatcagcagccgctacatcggtaacatcaagctgttcgggtctcactcgacgatt
gaactgccgaaaggtatgccgggcgacctgttatcacactttacccgcacgcgtattctg
aataaaccaatgaatatgcaattgctgggtgatgcagtcgcacagccagaacgtcgtggt
ggtggccgtcctgcgggtgcgggcggcgaacgtcgtgatggcgcagcgccacgccgctct
ttcggcggtggtgaacgccgtgaaggtaacgctaacggcggtgagcgtcgcgaacgttct
ttcaatcgtgatgccgctgcaccgcgtgctccacgtcgtcgtcctgctgacgcataa
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