Pectobacterium versatile: OA04_11530
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Entry
OA04_11530 CDS
T07772
Symbol
sbcC
Name
(GenBank) exonuclease SbcCD, C subunit
KO
K03546
DNA repair protein SbcC/Rad50
Organism
pvz
Pectobacterium versatile
Brite
KEGG Orthology (KO) [BR:
pvz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvz03400
]
OA04_11530 (sbcC)
DNA repair and recombination proteins [BR:
pvz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
OA04_11530 (sbcC)
Archaeal homologous recombinant proteins
OA04_11530 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
ABC_tran
APG6_N
cobW
SMC_N
VirC1
AAA_21
nSTAND3
NTPase_1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AVT57770
LinkDB
All DBs
Position
complement(1257590..1261273)
Genome browser
AA seq
1227 aa
AA seq
DB search
MKILSLRLKNLNALKGEWKIDFTQEPFSSNGLFAITGPTGAGKTTLLDAICLALYHETPR
LGLLSASQNDLMTRNTAECLAEVEFEVKGVGYRAFWSQRRARNAPDGNLQSPKAELALIE
DGKILCEKLNDKKEMITQLTGLDFGRFTRSMMLSQGQFAAFLNAKADDRAELLEELTGTD
IYGLISERVYDKHKQANVALNTLQARASGIQLLTDEQRQQVEEQLAALIQQEQRGNVERE
QALTTLRWFEQLTQQHTQLTSTQAQHASAESAIQQAKPQLDRLTHSEPAEKLRPLHQERE
RYRQESLTLAQRIEQLTEKQAAEQVTLTALRQQEEKAEQDVSEHKRVRQQQEQVINEQVV
PLDHRITTLVQQKTQQQDELAKTQARLHADESKQTQTAAEQQQAKQQLEQIQSYRQQHAH
HQQWGEQLPQWRTQFRQLRQLQDEQDKLEKKQTQHTAQSAVLQQEAVALAAQQREQQAVV
DAARQQFMQHDETRQQQEAHQPLSALQQQFNQRIDQRAERQRLATISDQFQRLHVRKQQY
LTKQDEVQRHISQSEILKKQQQSEHEQRSQHLVDLETLHRQEEHIVKLETERQRLQAGDP
CPLCGSTEHPAIERYQALQPSETQSRLTALQQEVNRLTTAQANTTAQLASLEQQREQLQQ
EIAQLDSEHHALRQQWQDVSERLQVNYTLEQPDEIAAWLAQNEAEEQAIRQQITAREQVQ
KQWQESKDLLTAAEVLQRELDQKIELNTQQQTALSVTQQEIEQSLQNVLQQITQHTQEIT
QTLATLSLVLPEADAQNDWLGQRESEWQDWKAKEQEQSRLVPLLATLDSDLQHLNCSVAE
AKQQLQAQQQQLEQHLALLNTSQQERLALFGDRQIAAVREQLQRTSQQYDDVLRLALSAR
QQTETTLSRLTGELASTQQQYEQSTRQHENAADRFSQALQQSTFADETTFLNALLDEQER
QTLQAWKEKLYQSLQQAAALHQQAERDLLAHQQKRPTSLTEDATQEAAQQQLAALDETLK
TNLRQQGEFQHQLADDRQHRQDQQDLFNEIAQSQQMYDDWSCLNTLIGSQSGHKFRKFAQ
GLTLDHLVYLANLQLSRLHGRYMLKRKPGDELELLVMDTWQADAERDTRTLSGGESFLVS
LSLALALSDLVSHKASIDSLFLDEGFGTLDAETLDIALDALDNLNASGKTIGVISHVEAM
KERIPVQIKVQKVNGLGVSRLAPQYAV
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcctcagtctgcgcttaaagaatctcaacgcgctgaaaggcgaatggaaaatc
gacttcacgcaggagccgttttccagcaatggcttatttgccattaccggcccgaccggc
gcgggaaaaaccacgctgctggatgccatctgtctggcgctgtatcacgaaacgccacgg
cttggcctgctttccgccagccagaatgacctgatgacgcgtaataccgctgagtgtctt
gccgaggtcgagtttgaagttaaaggcgtcggatatcgcgccttctggagccagcgtcgg
gcaagaaatgcgccagacggcaacctacagtcccccaaggctgaactcgcgctcattgaa
gacggcaaaattctgtgtgaaaagctcaatgataagaaagagatgatcacacagctcacc
ggactggatttcggccgcttcacgcgatccatgatgctgtcgcaggggcagtttgccgcc
ttcctcaacgccaaagcagacgacagagcggaactgctggaagagttgaccggcacggac
atctacggcctgatttccgaacgcgtctatgacaagcacaagcaggcaaacgtcgcactg
aacacgctacaggcgcgcgcatcaggcattcaactgctgaccgatgagcaacgtcagcag
gtggaagaacagcttgccgcgctgatccagcaggaacaacgaggcaacgttgaacgtgag
caagcgctgactacgctgcgctggtttgagcaactgacgcagcagcacacgcagttaacc
agcacgcaggcgcagcatgcgagcgccgaatccgccattcagcaggctaaaccgcagctt
gacaggttaactcacagcgaaccggcagaaaaactgaggccgctacatcaggaacgagag
cgctatcgacaggaatctcttacgctggcacagcgtattgaacaactgaccgagaaacag
gccgccgagcaggtgacgctaaccgcgctacgccagcaggaagaaaaagcagagcaggat
gttagtgagcacaaacgggtacggcagcaacaagagcaggtgatcaacgaacaggttgtg
ccacttgaccatcgcattaccacgctggtgcagcaaaaaacgcagcaacaggacgaactg
gcaaaaacgcaggctcgtctgcacgcggatgaaagtaaacaaacgcagacagcggcggaa
cagcagcaggctaaacagcagcttgaacagatccagtcttaccgccagcaacacgcgcat
catcagcagtggggagaacaacttcctcagtggcgcactcagtttcgccaactgcgccag
cttcaggacgagcaagataagctggagaaaaaacagacgcagcacaccgcacagtcggca
gttctacagcaagaggctgtggcgctggcggcacaacagcgtgaacaacaagcggtcgtt
gatgcagctcgtcagcagttcatgcaacacgatgagacacggcaacagcaggaagcgcac
cagccgctttccgccctgcaacagcagtttaatcaacgcattgaccagcgcgctgaacgc
caacggctcgcgacaatcagcgaccagttccagcgtctgcatgtccgcaagcagcagtac
ctcaccaaacaggatgaggtacaaaggcatatcagccagtcagaaatcttaaagaaacag
cagcagtctgaacatgagcagcgaagccagcatctggtcgatctggaaacgctgcatcgg
caagaagagcatatcgttaagctggaaaccgaacgtcaacggctacaggctggcgatcct
tgcccgctatgtggttcaaccgagcatcccgctatcgaacgctatcaggcactgcaaccg
tctgaaacccaaagccgcctgacagcgctacagcaggaagtgaatcggttaacgacggcg
caggcgaatacgactgcacagttagcctcgctagagcaacagcgggaacagctgcaacag
gagatcgctcaactcgatagcgaacatcatgccctgcgacaacagtggcaagatgtcagt
gagcgcttacaagttaactacacgctggaacaacctgatgagatcgcagcctggctggcg
caaaatgaagccgaagaacaggctattcgacagcagattaccgcacgcgagcaagtgcaa
aaacagtggcaggaaagtaaggatttactgactgccgcagaggtattacagcgggaacta
gaccagaaaatcgagttgaatacccagcagcaaactgcgctaagcgttacgcagcaagaa
attgagcagtcgctgcaaaacgtgctccagcagatcacgcagcacactcaggaaatcacg
cagacgctggcaaccttaagccttgttctacctgaagccgacgcacagaatgactggcta
ggtcagcgcgagagcgaatggcaagactggaaagccaaagagcaggagcaatctcgctta
gttccgctgttagccacgctggacagcgatcttcagcatctgaattgcagcgtggctgag
gcaaagcagcaactacaggcgcaacaacagcagttggaacaacacctcgcgctcctcaac
acaagccaacaggaacgactggcacttttcggcgacagacaaatcgcggctgtgcgcgaa
cagctacagcgtaccagccaacaatatgacgatgtgctccgcctggccctgtcagctcga
cagcaaaccgaaacgacgttgagccgcctgacgggggagctagcgagcacgcaacagcag
tatgagcagagcacccgccagcatgagaatgcggccgaccgctttagtcaggctttacag
caaagcacgttcgccgatgaaacgacgttcctcaatgcgctgcttgatgagcaggaacgt
cagacgttgcaggcatggaaggaaaagctgtaccaaagcttgcagcaggcggcggcactt
caccagcaggctgagcgggatctgcttgcccatcaacaaaagcgccccacctccctaacg
gaagatgccacacaagaagcggcacagcagcagttggcagcactggatgaaacgctgaaa
accaacctgcggcagcagggagagttccagcatcagttagctgacgatcgacaacatcgc
caggaccagcaggatttgttcaatgagatcgcccaaagtcagcaaatgtatgacgattgg
agctgccttaatacgctcatcggctcacaaagcgggcataaattccgtaagtttgctcag
gggctaacattggatcatttggtttatctcgccaatctccagctttcccgcctgcacggg
cgctatatgctgaaacggaaacccggcgacgagctggagctgctggtgatggatacctgg
caagcagacgccgagcgtgatacgcgtacgctgtccggtggcgagagcttcttagtgagt
ttatcgctggcgttggcgctatccgatctggtcagccataaagccagtatcgactcgctg
tttctggatgaaggcttcggcacgctggatgccgagacgctggatatcgcgctggacgcg
ctcgataacctgaacgcctccggcaaaaccattggcgtcattagccatgttgaagcgatg
aaagagcgtattccggtacagatcaaagtgcagaaggttaacggattaggcgtcagtcgg
ctggcgccgcagtacgccgtttag
DBGET
integrated database retrieval system
