Pectobacterium versatile: OA04_17680
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Entry
OA04_17680 CDS
T07772
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pvz
Pectobacterium versatile
Pathway
pvz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pvz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OA04_17680 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvz03400
]
OA04_17680 (mfd)
Enzymes [BR:
pvz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OA04_17680 (mfd)
DNA repair and recombination proteins [BR:
pvz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OA04_17680 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MFD_D3
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
DUF488
Motif
Other DBs
NCBI-ProteinID:
AVT58352
LinkDB
All DBs
Position
complement(1910701..1914153)
Genome browser
AA seq
1150 aa
AA seq
DB search
MMPENYRYSLPPKAGEQRLLGQLTGAACAVECAEIIERHAGLVVLIAPDMQNALRLRDEI
QQFTDQHVTTLPDWETLPYDSFSPHQEIISTRLSTLYQLPNMTRGVLILPVNTLMQRVCP
HSFLHGHALVLKKGQRLSRDKLRSQLEQAGYRSVDQVMEHGEYATRGALLDLFPMGSEEP
YRIDFFDDEIDSLRLFDVDTQRTLNEVPHINLLPAHEFPTDKTAIELFRSQWREQFEVRR
DAEHIYQQVSKGVWPAGIEYWQPLFFSEPLPSLFSYFPNNTLLVNTGNLEQSAERFWQDI
QQRFESRRVDPMRPLLQSDSLWLRVDGLFTELKAWPRVQLKTDTLPEKAANVNLAYLPLP
ELAIQHQQKSPLDALRRFIEQFDGQVIFSVESEGRRETLQELLARIKLNPTLINTLEQAQ
ERGTYLIIGASEHGFIDTLRQRALICESDLLGERVSRRRQDSRRTINTDTLIRNLAELRP
GQPVVHLEHGVGRYAGLTTLEAGGIKAEYLILTYAGEDKLYVPVSSLHLISRYAGGADEN
APLHKLGGDAWSRARQKAAERVRDVAAELLDIYAQRAAKSGFAFKHDKTQYQLFCESFPF
ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTT
LLAQQHFDNFRDRFANWPVKIEMISRFRSAREQTQVLKETQEGKVDILIGTHKLLQSDVH
WRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATP
PARRLAVKTFVREYDNLVVREAILREILRGGQVYYLYNDVENIEKATQRLAELVPEARIA
IGHGQMRERELERVMSDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQL
RGRVGRSHHQAYAYLLTPNPKAMSTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL
GDDQSGQMTSVGFSLYMELLESAVDALKAGREPSLEDLINSQTDVELRLPALLPDDFIPD
VNTRLSLYKRIASAKSTAELDELKVELIDRFGLLPDASRYLLQIAALRQQAQALGIRRIE
GNEKGGFIEFSEQNRVDPSHLIGLLQRDPGTYRLDGPTRLKFMKDLSDRPQRIEFIGSLL
GNMAQHTLAA
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgatgcctgaaaattaccgttattcgctgccgcccaaagcgggtgagcagcgcctgctg
ggccagttaaccggcgctgcctgcgccgttgaatgtgcagaaatcattgaacgccacgcc
gggctggtggtgcttatcgcacctgatatgcaaaacgctctgcgattgcgtgatgaaatt
cagcaatttaccgaccagcacgtcactacgctacctgactgggaaacgctgccctacgat
agtttttctccgcatcaggaaatcatttcgacccgcctctccacgctctatcaattgcct
aacatgacgcgcggcgttctgattctgccggtcaacacgctgatgcagcgcgtttgtccg
cacagtttcctacacggtcatgcgttggtgttgaaaaaaggccagcgcctctcacgtgat
aagctgcgttcgcagttggagcaggcgggctaccgcagcgtcgatcaggtcatggaacac
ggtgaatatgccacgcgcggcgcgctgctggatctgttcccgatggggagcgaagagccc
taccgtatcgatttctttgatgacgagatcgacagcctgcgcctgttcgatgtggataca
cagcgcacgctgaatgaagtgccgcacattaatctgctgcccgcccacgagttcccgacc
gacaaaaccgccatcgaacttttccgcagccaatggcgcgaacagtttgaggtgcgacgc
gatgccgagcacatttatcagcaggttagcaaaggcgtctggcccgctgggattgaatac
tggcagccgttattcttcagtgaaccgctgccgtcgttattcagctacttcccgaacaac
acgctgctcgttaacaccggcaatctcgaacagagcgccgagcgtttctggcaggatatt
cagcagcgttttgaaagccgtcgtgtcgatcctatgcgaccgctgttgcaatcagattca
ctctggttgcgtgtcgacggtctgttcaccgagctgaaagcgtggccgcgtgtgcagtta
aaaaccgatacgctgccggaaaaagccgccaacgtgaatctggcctatctgccgctgccg
gagctggcgattcagcaccagcagaaatccccgttggatgcactacgccgttttatcgaa
cagttcgacggtcaggtcattttttccgtcgagagcgaaggccgacgcgaaacgctgcaa
gagctgctggcacgaatcaaactgaacccgacgctcatcaacacgctggagcaggctcag
gagcgtggtacttacctgatcatcggtgccagcgaacacggttttatcgacacactgcgc
cagcgcgcgttgatctgcgaaagcgatctgctgggtgaacgcgtcagtcgccgccgtcag
gatagccgccgcacgattaataccgatacgctgatccgcaatctggcggaactgcggccg
gggcagcccgtcgtccacctcgaacacggcgttggtcgctatgccgggctgactacgtta
gaagctggcggcatcaaggccgaatacctgattttgacctatgcgggtgaagacaagctg
tacgttcctgtttcctcgctgcatttgatcagccgctatgcaggcggtgccgatgagaat
gcgccgctgcataaactgggtggcgatgcctggtcacgcgcgcggcaaaaagcggcggaa
agagtgcgcgatgtcgccgccgaactgctggacatttatgcccaacgtgcggcgaaaagc
ggctttgcctttaagcatgacaaaacacagtatcagcttttctgcgaaagtttccccttc
gagaccacgcccgatcaggcgcaggccatcaacgccgtgctaagcgacatgtgccaaccg
ctggcgatggatcgtttggtgtgtggcgatgtcggctttgggaaaaccgaagtggcgatg
cgcgccgcgttcttggccgttgaaaaccataagcaggttgccgttctggtgccgacaacc
ctgttggcacagcagcattttgacaacttccgcgatcgctttgccaactggccggtgaag
attgaaatgatctcccgcttccgcagcgcgcgtgaacaaactcaggtgctgaaggaaacg
caggaaggcaaagtcgatattctgattggcacccataagctgttgcagagcgacgtgcac
tggcgtgatttagggctgctaattgtggacgaagagcaccgcttcggcgtgcgtcacaaa
gagcgcatcaaagcgatgcgagcggatgtcgatatcctgacgctgaccgccacgccgatt
ccgcggacgctcaacatggccatgagcgggatgcgtgatctgtcgatcatcgccacgccg
cccgcccgccgtttagcggtgaaaacgttcgtccgcgaatatgacaatctggtggtacgc
gaagcgattctgcgtgagattctgcgcggcgggcaggtgtactacctctataacgacgtc
gaaaatatcgagaaagccacccagcgactagcagaactggtgccagaagcacgcatcgcg
atcggtcacggtcagatgcgcgaacgcgagctggaacgggtcatgagcgacttccaccac
cagcgttttaacgtgctggtatgtaccacgatcatcgaaacggggatcgatataccgagc
gccaacaccatcatcatcgagcgtgccgatcacttcggcttggcccagttgcaccagttg
cgcggtcgcgtcgggcgttcccaccatcaggcttacgcctacctgctgacgccgaatcct
aaagcgatgagcaccgatgcgcagaagcgtctggaagcgattgcctcattggaagacctc
ggcgctggttttgcgttggcaacgcacgatctggaaatccgtggtgcaggtgaactgctc
ggggacgatcagagcggacaaatgaccagcgtcggtttctcactgtatatggaactgctg
gaaagcgccgtcgatgccttaaaagcgggtcgggagccgtcgctggaagatctgatcaac
agccagaccgacgtcgaactacgtttacctgccctgctgcccgacgatttcatccccgac
gtcaatacgcgcctgtcgttatacaaacgtatcgccagcgcgaaaagcaccgctgaactg
gatgagttgaaggtcgaactgatcgatcgcttcggcctccttcccgatgcaagccgctat
ttgttgcagattgccgccctgcgtcaacaggcacaggcactgggtattcgccgtattgaa
gggaacgagaaaggcggttttatcgaattcagcgagcaaaaccgcgtcgatccctcccac
cttatcggcctgttacagcgcgatccgggcacctaccgccttgatggtccaacccgcctg
aaattcatgaaagatttgagcgaccgtccgcagcgcatcgagtttatcggttcgctgctg
gggaacatggctcagcatacgctggcagcgtaa
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