Pectobacterium versatile: OA04_19090
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Entry
OA04_19090 CDS
T07772
Symbol
rnb
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
pvz
Pectobacterium versatile
Brite
KEGG Orthology (KO) [BR:
pvz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pvz03016
]
OA04_19090 (rnb)
Enzymes [BR:
pvz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
OA04_19090 (rnb)
Transfer RNA biogenesis [BR:
pvz03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
OA04_19090 (rnb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
AVT58485
LinkDB
All DBs
Position
complement(2059092..2061026)
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AA seq
644 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRVEGVVKGTDKGFGFLEADGQKSYFIPPPHMKKVMHGDRI
TATLHTEKEREIVEPETLIEPFLTRFVGRIHKKDDRLSITPDHPLLKDAIPCRAARDVTH
DFQEGDWAVAEMRRHPLKGDRGFHAELTQYITTGDDPLVPWWVTLSRHNLERSAPEVETT
ERHDGELVREDLTALSFVTIDSASTEDMDDALCVQDNGDGSLQLTIAIADPTAYVAAGSE
LDNIARQRAFTNYLPGFNIPMLPRPLSDDICSLRPDERRPVLACRVTIAADGALGDDIHF
FAAWIESKAKLAYDNVSDWLENQGEWQPQNDAIAEQIRLLHRLCLARSDWRTTHALVFKD
RPDYRFLLGEKGDVLDIVVEHRRIANRIVEESMIAANVCAAIVLRDKLGFGIYNVHNGFD
PASIEQAVAVLDTHGVQADAQALLSLEGFCTLRRELDAQPTQFLDSRIRRFQSFAEVSTT
PGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAVITGQAAEKPQDDVTVQLAERRRLNRM
AERDVGDWLYARYLKDKAGTDSRFNAEIIDVTRGGLRVRLLDNGAVAFIPSSFIHAVRDE
LVCSQEMGTLSVKGDVVYRQGDTLDVVIAEVRLETRSIVAKPAA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataatccgctgcttgcacagctaaaacagcaacttcactctcagacaccg
cgtgttgaaggtgtcgtcaaaggtaccgataaaggattcggcttccttgaagctgacgga
caaaaaagctatttcattccccctccgcacatgaaaaaagtaatgcacggtgaccggatt
accgccaccctgcatacggaaaaagagcgggaaattgtcgagccagaaacgctgatcgaa
cccttccttacccgatttgttgggcgcatccataaaaaagacgatcgtttatccattacg
cctgaccatccgctgctgaaagatgccatcccttgccgcgccgcgcgcgatgtcacacac
gattttcaggaaggcgattgggccgtagccgaaatgcgccgtcacccgttgaagggcgac
cgtggatttcatgctgaactgacgcagtacatcaccacgggtgatgacccgctggtaccg
tggtgggtgacattgtcacgccataatctggagcgctcagccccagaggttgaaacgact
gagcgccatgacggcgaactcgtccgtgaagatctcaccgcactgagctttgtcactatc
gacagcgcgagcactgaagatatggacgatgcgttgtgcgtgcaggacaacggtgatggt
tcactgcaattaaccatcgcgattgccgatccgaccgcgtatgtcgcggcgggtagcgag
ctggacaacattgcacgccagcgcgccttcaccaactatctgcctggcttcaacatcccg
atgctgccacgcccgctgtcggacgatatctgttccctgcgcccagacgagcgtcgccct
gttcttgcctgccgcgtgacgattgccgccgacggtgcgttgggtgacgacattcacttc
tttgccgcctggatagaatccaaagccaaattagcctatgacaacgtctctgactggctg
gaaaatcaaggtgaatggcagccgcaaaatgacgcgattgccgaacaaattcgtttgctg
catcgcctctgtctggcgcgcagcgattggcgcaccacccatgcgctggtatttaaagat
cgcccggattaccgcttcctgctgggtgaaaaaggcgacgtgttggatatcgtggttgaa
catcgccgtatcgccaaccgtatcgttgaagaatccatgattgcggccaacgtctgtgcg
gccattgtgctgcgcgataagctgggcttcggcatctataacgtgcataacggcttcgat
cctgcctcgattgaacaagcggttgccgtattggatacccacggtgttcaagctgacgcg
caagcgctgttgtcgctggagggcttctgcacgctgcgccgcgagctggatgcccagccg
acacagttcctggacagccgcattcgtcgcttccaatcgttcgcggaagtgagcaccacg
ccggggccgcactttggtctggggctggaagcctacgccacctggacatcgccgatccgt
aaatacggcgatatggtgaaccaccgtttgttgaaagcggttatcactgggcaggccgcg
gaaaaaccgcaggacgacgtcacggtccagttggcagaacgccgccgccttaatcgtatg
gctgagcgcgacgtcggcgactggctgtacgcccgctacctcaaagataaagccggtacg
gatagtcgcttcaatgcggaaatcattgacgtcacacgcggtggcctgcgcgttcgcctg
ctggataacggcgcagtggcatttatcccgtcctcctttatccacgccgtacgcgatgag
ctggtgtgcagtcaggaaatgggcaccctctcagtgaaaggcgatgtggtttatcgtcag
ggggatacgctggacgtcgtcattgctgaagttcgtctggaaacccgcagcatcgtggca
aaacctgccgcctaa
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