Pectobacterium versatile: OA04_23240
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Entry
OA04_23240 CDS
T07772
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pvz
Pectobacterium versatile
Brite
KEGG Orthology (KO) [BR:
pvz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pvz03016
]
OA04_23240 (rnd)
Enzymes [BR:
pvz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
OA04_23240 (rnd)
Transfer RNA biogenesis [BR:
pvz03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
OA04_23240 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
AVT58881
LinkDB
All DBs
Position
complement(2524545..2525669)
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AA seq
374 aa
AA seq
DB search
MNYQLITSDIGLQQVCSLARRFPQVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLTI
TDWAPFQALLRDEQVTKFLHAGSEDLEVFLNAFGTLPTPFIDTQILAAFLGKPLSYGFAA
LVADYMGVTLDKSESRTDWLARPLSEKQCDYAAADVFYLLPMAIQLVADTEAAGWMNAAL
DECLLLCQRKQDILAPALAYREFGNAWQLRGRNLACLQRLAEWRLRKARERDSAVNFVVR
EENLLQVARCLPTSLGELSSLGLSGPEIRYHGKTLLDCVAQTDGIADSDCPPPVMNLIDY
PGYKKAFKDIKALVQRVSEQSGLSAELLASRRQINRLLNWHWKLSGQDAGSPEMLSGWRG
QLYGDELREIVQGY
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
ttgaattatcagttgatcacttccgacatcgggttacaacaggtttgctccctggcgcga
cgctttccgcaggtagcattggacacggagttcgtcagaacccgcacgtattatccgcaa
ttagggttgattcaattgtatgacggcgaacagctttcacttatcgacccgttaacgatt
accgactgggccccttttcaagcgttactgcgtgatgaacaggtcactaaattcctgcat
gcgggcagcgaagatctggaagtgtttctcaatgcgtttggaacgctgccgacgcctttc
attgatacacagattctggccgcatttttaggcaagccgctctcatatggttttgctgcg
ctggtggctgactacatgggcgtgacgttggataaaagcgagtcgagaacggactggctt
gctcgtccgctgagcgaaaaacagtgtgattatgccgctgccgatgtgttctatctgttg
ccgatggctattcaactggtggcagatacggaagccgcagggtggatgaatgccgcgcta
gatgagtgtctcctgctgtgtcagcgtaaacaggatattctggcaccggcgctggcctat
cgcgaatttggcaatgcctggcagctgcgtggccgaaatctggcttgccttcagcgtcta
gctgagtggcgtttgcgtaaagcgcgtgagcgagacagtgcggtgaattttgtcgtacgt
gaagagaacctcttgcaggtggcgcgttgtctgccgacttcgctgggtgaactgagctcg
ctggggctgagcggcccggaaatccgttaccacggcaaaacgctgctggactgcgttgca
cagacagacggcattgctgactcggattgcccaccgccggtgatgaatttgatcgactat
cccggctataaaaaggcgtttaaagatatcaaagcgctggtgcagcgtgtgagcgaacag
agtggattatccgccgagctattggcttcacgtcgtcaaattaatcgcctgctgaactgg
cactggaaattaagcgggcaagatgcgggttcgccagaaatgttgtctggctggcgtgga
cagttatatggcgatgaactgcgtgaaattgtgcaaggttattaa
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