Pectobacterium versatile: OA04_30930
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Entry
OA04_30930 CDS
T07772
Symbol
dbpA
Name
(GenBank) ATP-dependent 3'-5' RNA helicase, specific for 23S rRNA
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
pvz
Pectobacterium versatile
Brite
KEGG Orthology (KO) [BR:
pvz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pvz03009
]
OA04_30930 (dbpA)
Enzymes [BR:
pvz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
OA04_30930 (dbpA)
Ribosome biogenesis [BR:
pvz03009
]
Prokaryotic type
rRNA helicases
OA04_30930 (dbpA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AVT59623
LinkDB
All DBs
Position
complement(3365642..3367024)
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AA seq
460 aa
AA seq
DB search
MSTTSFSSLALPAEQLSNLNELGYTDMTPVQAATLPAVLSGADVRAKAKTGSGKTAAFGI
GLLDRIVVSDFTTQALVLCPTRELADQVSKELRRLARFAQNIKILTLCGGQPMGQQLDSL
VHAPHIVVGTPGRIQDHLRKQSLSLDSLKVLVLDEADRMLDMGFTDAIDDVISYTPSDRQ
TLLFSATYPEEIEQISARVQRQPQRFEVADGVEESAIEQRFYETTKDQRLPLLIAILGHY
QPASCVVFCNTKRDCQSVFDALDMRGISVSALHGDLEQRDRDQVLVRFANRSCRVLVATD
VAARGLDIKELELVVNFELAFDPEVHVHRIGRTGRAGTKGLAVSLCTPQEMNRANLIEDY
LGMRIKWTPSDEISRSGEVALEPEMMTLCIDGGRKAKIRPGDILGALTGDAGLTAAEVGK
IDMFPMHAYVAIRKASAKRALQQLQKGKIKGKSCKARLLK
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
gtgagtacaacctctttttcttccctcgcgctgcccgcagagcagttatctaatcttaat
gaactgggctataccgacatgacgccagtccaggcggcaacgttgccagccgttctgagc
ggcgcagacgtgcgggccaaggcgaaaaccggtagcggcaaaacggcggcatttggcatt
gggctgctggatcgcattgtcgtgagcgactttaccacgcaggcgctggtgctgtgccca
acgcgtgagctggccgatcaggtcagcaaagagctacgtcgtctggcgcgttttgcacaa
aacattaaaattctgacactgtgcggcggccagccgatgggccagcagctcgattcgctg
gttcacgccccgcatattgtcgtcgggacgccgggacgtattcaggaccatttacgcaag
cagtcgctgtctctggatagcctgaaagtgctggtgctggacgaagcggatcgcatgctg
gatatgggctttactgatgcgattgatgatgtgatttcctatacgccgtccgatcgtcaa
accctgttattttccgctacctatccggaagagatcgaacagatcagcgcacgcgttcag
cgtcagccgcaacgtttcgaggttgcggacggtgtagaagagtcggctattgaacaacgt
ttctatgagacaacgaaagatcagcgcctgccgctgttgattgccattttgggccattat
cagcctgcgtcctgcgtggtgttctgtaacacgaagcgtgattgccagagcgtatttgac
gcgctggacatgcgtgggattagcgtatccgcgctgcatggcgatctggagcagcgcgat
cgcgatcaggttctggtgcgttttgctaaccgtagttgccgtgtcctggtggcaaccgat
gttgcggctcgcggcctcgatatcaaagagctggagctggtagtgaattttgagctggct
ttcgatcctgaagttcacgttcaccgcattggcagaacgggccgcgcgggtacgaagggt
ctggcggtgagcctgtgtacaccacaggaaatgaaccgcgctaatctgattgaagattat
ctcggtatgcgcattaaatggacaccgtcggatgagattagccgcagtggcgaggttgcg
ctcgaacctgagatgatgacgctgtgcattgatggtggcagaaaagccaaaatccgtccc
ggcgatatcctcggtgcgttaaccggcgatgcagggttaacggcagcggaagtggggaaa
attgatatgtttccgatgcatgcctatgtggcaatccgtaaagccagcgccaaacgtgcg
ttgcagcagctccagaaaggcaaaatcaaaggaaaaagctgcaaggccagattgttaaag
taa
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