Pectobacterium versatile: OA04_42280
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Entry
OA04_42280 CDS
T07772
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pvz
Pectobacterium versatile
Pathway
pvz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OA04_42280 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvz03019
]
OA04_42280 (recQ)
03400 DNA repair and recombination proteins [BR:
pvz03400
]
OA04_42280 (recQ)
Enzymes [BR:
pvz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OA04_42280 (recQ)
Messenger RNA biogenesis [BR:
pvz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OA04_42280 (recQ)
DNA repair and recombination proteins [BR:
pvz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
OA04_42280 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
AVT60689
LinkDB
All DBs
Position
complement(4588157..4589986)
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AA seq
609 aa
AA seq
DB search
MSTAEVLNKEALAVQVLRDTFGYQQFRPGQQEIISATLSGQDCLVIMPTGGGKSLCYQIP
ALVMDGLTLVVSPLISLMKDQVDQLQAYGVSAACLNSTQTREQQLEVMAGCRTGHIKLLY
IAPERLTTDSFLDHLAHWQISLIAVDEAHCISQWGHDFRPEYRALGQIKQRFPHLPFIAL
TATADEATRNDIVRLLDLRSPLIQISSFDRPNIRYTLVEKFKPLDQLWMFVQAQRGKSGI
IYCNSRSRVEDISARLQARGLSAGAYHAGLDNERRAQVQEAFLRDDLQVVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLAAEAALFYDPADMAWLRRCLEEKPAGPQ
LDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEACGNCDICLDPPKRYDGLVEAQKAL
SCVYRVGQRFGLGYIVEVLRGANNQRIRDFGHDKLPVYGIGKEKSQEHWVSVLRQLIHLG
LLNQNITMHSAVQLTESARPVLRGEMPLQLAVPRVINLKPRANQKSYGGNYDRKLFAKLR
KLRKSIADEDNIPPYVVFSDATLLEMAEMMPITAGELLNINGVGHRKLERFGAPFMNMIR
DHVDNNDDE
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
gtgtctacggcggaagtattgaataaggaagcgctggcggttcaggttctgcgggacacg
ttcggctaccagcaattccgaccgggtcagcaggaaattatcagcgcgacgctcagtggg
caggactgtctggttatcatgccgacaggcggcggcaaatcgctgtgctatcaaatcccc
gcgctagtgatggacgggctgacgctggtagtgtccccgttgatttcactgatgaaagat
caggttgatcagcttcaggcctacggcgtctctgccgcttgccttaattcgacgcagacg
cgcgagcagcagcttgaggtgatggcaggttgtcgtaccggtcatatcaagctgctttat
attgcgccggaacgtctgacgacggacagcttcctcgatcatcttgcccattggcagatt
tccctgatcgcggtggatgaagcgcactgcatttcccaatggggacacgatttccgccct
gaataccgggcgctggggcaaattaaacagcgcttccctcatcttccttttattgcgttg
accgctaccgccgacgaggccacgcggaacgatatcgttcgcctgttggatctccggtcg
ccgctgattcagatcagcagctttgaccgcccgaatattcgctacacgctggtggagaag
ttcaagccgctcgaccagctctggatgttcgtgcaggcgcagcgtggaaaaagtggcatc
atctactgcaatagccgttcccgcgtggaggacattagcgcgcgtttgcaggcgcgtggg
ctgagcgcaggggcttatcacgctggattggataacgaacgacgtgcacaggtgcaggaa
gcgttcctgcgtgacgatcttcaggtggtggtagcgaccgtcgcctttggtatgggtatc
aacaagcctaacgtgcggtttgtggtgcactttgatattccgcgcaacatcgaatcctac
tatcaggaaacggggcgagctggacgtgacggcctcgccgccgaagctgcgctgttctac
gacccggcggatatggcgtggctgcgccgctgtctggaagaaaaaccggctgggccgcag
ttggatatcgagcgtcataagctcaatgcgatgggcgcatttgccgaagcgcaaacctgc
cgccgtctggtgctgctgaactatttcggtgaaggacgccaagaggcctgcggcaactgc
gatatttgtctcgatccgccgaagcgctatgacggtctggtagaagcgcaaaaggcgctc
tcctgcgtataccgcgttgggcagcgttttggtttagggtatatcgtcgaggtgctgcgc
ggggcgaataaccagcgtatccgtgacttcggccatgacaaactgccggtttacggtatt
ggtaaagagaaatcccaggaacattgggttagcgtgctgcgccagctgattcatctgggt
ttgctgaaccagaacatcacaatgcattctgcggtacagcttaccgaatctgcgcgtccg
gtattgcggggtgaaatgccgctacagctggccgtgccgcgtgtgattaacctaaaaccc
cgcgccaatcaaaaatcgtacggtggaaattacgaccgcaagctgttcgccaaattgcgc
aaactgcgtaaatctatcgcggatgaagacaatattccgccttacgtggtgttcagcgat
gccacgctgctggagatggccgaaatgatgccgatcaccgcgggtgaactgctgaatatc
aacggggttggacaccgtaaactcgaacgttttggtgcgcctttcatgaacatgattcgc
gatcatgtcgataataatgatgatgagtga
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