Pectobacterium versatile: OA04_42390
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Entry
OA04_42390 CDS
T07772
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
pvz
Pectobacterium versatile
Pathway
pvz00300
Lysine biosynthesis
pvz00470
D-Amino acid metabolism
pvz01100
Metabolic pathways
pvz01110
Biosynthesis of secondary metabolites
pvz01120
Microbial metabolism in diverse environments
pvz01230
Biosynthesis of amino acids
Module
pvz_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
pvz00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
OA04_42390 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
OA04_42390 (dapF)
Enzymes [BR:
pvz01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
OA04_42390 (dapF)
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Paralog
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Motif
Pfam:
DAP_epimerase
PhzC-PhzF
CntK_N
Motif
Other DBs
NCBI-ProteinID:
AVT60700
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All DBs
Position
complement(4601035..4601859)
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AA seq
274 aa
AA seq
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MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHCGVGFDQLLVVEPPYDPELDFHY
RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIAVSTQTGRMVLSVTDDELVRVNMGE
PNFEPQQVPFRAVKAEKTYIMRADEHTVLCGVVSMGNPHCVIQVEDVDTAKVETLGPLLE
SHERFPERANIGFMQIVDSHTVRLRVYERGAGETQACGSGACAAVAVGIQQGLLSANVRV
SLPGGELDIQWDGPGHPLFMTGPATHVYDGFIHL
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgcagttcgctaagatgcacgggttaggcaacgatttcatggttgttgatgccgttacg
caaaacgtttatttttcacccgaattgattcgccgtttggcggatcgacactgtggtgtc
gggttcgaccaactgctggttgtcgagccgccctacgatcctgaactggattttcattac
cgcatttttaacgcggatggcagcgaagtggcacagtgcggtaatggcgcgcgctgcttt
gctcgctttgtccgcttgaaagggttaactaacaagcgtgacatcgccgtcagtacgcag
acgggccgaatggtactgtcggtaaccgatgacgaactggtgcgcgtcaacatgggcgaa
ccgaatttcgagccgcaacaggtgccttttcgcgcggtcaaagcggagaaaacttacatc
atgcgtgccgacgagcatacggtgctgtgtggcgtggtgtcgatgggcaacccgcactgt
gtgattcaggttgaggatgtggacacggcgaaggtagaaacgctggggccgctgctggaa
agccacgagcgttttcccgagcgtgccaacatcggctttatgcaaattgttgatagccac
actgtccgtctgcgggtgtatgaacgcggtgcgggagaaacgcaggcgtgcggtagcggc
gcgtgtgctgctgtggcggtagggatccagcaggggttattgtccgcgaacgttcgcgta
tctctgccgggcggggaattggatatccagtgggatgggccgggacatccgttattcatg
accgggcctgcaacgcatgtctacgatggatttattcatttatga
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