Pectobacterium parmentieri WPP163: Pecwa_0812
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Entry
Pecwa_0812 CDS
T01106
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pwa
Pectobacterium parmentieri WPP163
Pathway
pwa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pwa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pecwa_0812
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pwa03019
]
Pecwa_0812
03016 Transfer RNA biogenesis [BR:
pwa03016
]
Pecwa_0812
Enzymes [BR:
pwa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Pecwa_0812
Messenger RNA biogenesis [BR:
pwa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Pecwa_0812
Transfer RNA biogenesis [BR:
pwa03016
]
Prokaryotic type
tRNA degradation factors
Pecwa_0812
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
S1_RRP5
KH_2
S1_2
OB_RRP5_4th
KH-I_KHDC4-BBP
aRib
KH_SLS1_2
DUF4172
Spt6_S1
Motif
Other DBs
NCBI-ProteinID:
ACX86631
LinkDB
All DBs
Position
860887..863007
Genome browser
AA seq
706 aa
AA seq
DB search
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKNAKPGQSFFPLT
VNYQERTYAAGRFPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFLNEVQVIATVVSV
NPQVNPDIVAMIGASAALSLSGIPFSGPIGAARVGYLNDQYVLNPTTDELKESRLDLVVA
GTQGAVLMVESEAEVLSEDQMLGAVVFGHDQQQIVIENINSLVAEAGKPKWEWHAPEVNI
SLEQRVQALSEARLGDAYRITEKQERYAQVNVIKADVVAALQAEDETLNAGEIQEILGNI
EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTER
DAQTIDELTGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKANE
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGDNFVVLSD
ILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA
ISTPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAST
DGEKAKHAIRRIEEITAEIEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEANAQTQEAAAPSSEE
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
ttgctgaatccgatcgttcgtaagtttcaatatggtcagcataccgtcacgctagagacc
ggtatgatggcacgccaggctaccgccgctgtaatggtaagcatggatgacactgcggta
ttcgttaccgttgtcggcgctaaaaatgctaaaccaggccaaagtttcttcccgttgacg
gttaactatcaggagcgtacctacgctgctggacgtttccccggtggttttttccgccgt
gaaggtcgcccaagcgaaggcgaaacgctgatttctcgtctgattgaccgtccgattcgc
cctctgttcccagaaggcttcctgaatgaagttcaggtgattgccactgtcgtttccgtt
aacccacaggttaaccctgacatcgttgccatgattggtgcttctgcggcgctgagcctg
tctggtatcccgttcagcggtcctatcggtgcagcacgcgtcggttacctgaacgaccag
tatgtcctgaacccaacgacagatgagctgaaagaaagccgtctggatctggttgttgca
ggtacacaaggcgcagttctgatggtggaatcagaagctgaagtgctgagtgaagatcag
atgctgggtgcagtcgtgtttggtcacgaccaacagcagatcgttatcgaaaacatcaac
tcactggttgcagaagcgggcaaaccgaagtgggaatggcatgcgccagaagttaatatt
tctttagagcaacgtgtacaggctctgtctgaagcacgtttgggtgacgcttaccgtatc
accgaaaaacaagagcgttatgcacaagttaacgtcatcaaagctgacgttgttgctgcg
ctgcaagccgaagatgaaacgctgaatgctggtgagatccaggaaattctgggcaacatc
gagaaaaatgtcgtgcgtagccgtgtactggctggcgaaccgcgtatcgatggccgtgaa
aaagacatgattcgtggtcttgatgtgcgtactggtgtactgccacgtacccacggttct
gcgttgttcacccgtggtgaaacgcaggcgctggtaactgcaacgttgggtactgagcgt
gacgcgcagactatcgacgaactgaccggtgaacgtaccgatcgcttcctgctacactac
aacttccctccgtactctgtcggtgaaaccgggatggttggctcgcctaagcgtcgtgaa
attggtcacggtcgtctggctaagcgcggtgtgttggctgttatgccgaaggcgaacgaa
ttcccgtacaccgtgcgtgtggtctctgaaatcacggaatctaacggttcttcttccatg
gcgtctgtctgcggtgcttctctggcactgatggatgcaggtgtgccgatcaaatcagcc
gttgcgggtatcgcgatgggtctggtgaaagaaggcgacaactttgttgttctgtccgac
attctgggtgatgaagatcatctgggcgatatggactttaaagttgctggtagtcgtgaa
ggtatcactgcgctgcagatggatatcaagatcgaagggattacccgtgagatcatgcag
gttgctttgaatcaagccaagggtgcgcgtttgcacattctgggtgtgatggagcaggca
atcagcacgccgcgtggcgatatctctgaattcgcaccgcgtattcacaccatcaaaatc
agtaccgataagatcaaagatgtgattggtaaaggtggttctgtgatccgtgcgctgacg
gaagagactggcacgactattgaaattgaagacgatggtactgtgaagatcgcttcaact
gacggcgaaaaagcaaaacacgcaattcgtcgtattgaagagatcactgccgaaatcgaa
gttggccgcgtgtatcagggtaaagtgactcgcatcgttgactttggtgctttcgtcgct
attggcggtggcaaagaaggcctggtgcatatttctcagatcgctgacaagcgcgtagag
aaagtgactgactacctgcagatgggtcaggaagtgccggtcaaggttctggaagttgat
cgtcagggccgcgtgcgcttaagcatcaaagaagccaatgcacaaactcaggaagcggca
gctccgtcttctgaggaataa
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