Pectobacterium parmentieri WPP163: Pecwa_0814
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Entry
Pecwa_0814 CDS
T01106
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pwa
Pectobacterium parmentieri WPP163
Pathway
pwa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pwa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pecwa_0814
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pwa03019
]
Pecwa_0814
03009 Ribosome biogenesis [BR:
pwa03009
]
Pecwa_0814
Enzymes [BR:
pwa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Pecwa_0814
Messenger RNA biogenesis [BR:
pwa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Pecwa_0814
Ribosome biogenesis [BR:
pwa03009
]
Prokaryotic type
rRNA helicases
Pecwa_0814
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_C
CMS1
Cas3-like_C_2
AAA_22
DRTGG
Motif
Other DBs
NCBI-ProteinID:
ACX86633
LinkDB
All DBs
Position
864204..866102
Genome browser
AA seq
632 aa
AA seq
DB search
MTDLSTSFSDLGLSAPIINALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF
ALPLLNNLKPELKAPQMLVLAPTRELAVQVAEACNDFAKHMHGVNVVALYGGQRYDVQLR
ALRGGAQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAT
HQTALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWTVQGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNV
ERTMKLTIPEVELPNAELLGQRRLAKFAAKVQQQLESSDLDMYRALLTKLQPQEELDIET
LAAALLKMAQGERPLILPPDPAFRPRREFRDRDESRSDSRGDRRRDPRDSRESRDGDRPQ
RRERRESGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGSHSTIELPKG
MPGDLLSHFTRTRILNKPMNMQLLGDAVAQPERRGGNRPAGAGGERRDGAAPRRSFGGGE
RRESNGNGGERRERSFNRDAAPRAPRRRPADA
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgactgatttatctacttctttttccgatttagggctgtctgctcctattattaatgcc
ctgaccgatctgggttatgaaaaaccatcgccgattcaggctgaatgtattcctcacctg
ctgaacggtcgcgatgtgctgggtatggcacagaccggcagcggtaaaactgcggctttt
gctctgccattactcaataatttaaagcctgagttaaaagcaccgcagatgctggtgttg
gctccaacccgtgaactggctgttcaggttgctgaagcctgtaatgattttgccaaacat
atgcacggcgttaatgttgttgccctgtacggcggccagcgttatgacgttcaactgcgc
gctttgcgtggtggggcacagatcgttgttggtactcctggccgtctgctggaccacctg
aaacgcggtacgctggatctgtccaacctgagtggtttggtactggacgaagcagatgaa
atgctgcgtatgggcttcatcgaagatgttgaaaacatcatggctcagatcccggctacg
catcagactgcgctgttctctgcaaccatgccggaagcgattcgccgtattacgcgccgt
ttcatgaaagatccgcaggaagttcgcatccaatcaagcgtgactacgcgtccagacatc
agccagagctactggacggtgcagggtatgcgtaaaaatgaagcattggtacgtttcctg
gaagcagaagattttgatgcggcgattattttcgttcgtaccaagaacgcaacgctggaa
gtggcagaagcgctggaacgcagcggttacaacagtgccgcgctgaatggtgacatgaac
caggcgctgcgtgagcaaacgctggagcgtctgaaagatggtcgtctggatatcctgatc
gcgaccgatgttgcggcacgtggtctggacgttgagcgtatcagtctggtagtgaactac
gatattccgatggatgccgagtcttacgtccaccgtattggtcgtactggtcgtgcaggt
cgtgcaggtcgtgcactgctgtttgtagaaaaccgcgagcgtcgcctgttgcgcaacgtt
gaacgtacaatgaagctgacaattcctgaagtggaattgccaaatgcggaattactggga
caacgtcgcttggctaagtttgccgctaaagtacagcagcaactggaaagcagcgatctg
gacatgtaccgcgcgctgttgacgaaactgcaaccgcaggaagagctggatatcgaaacg
ctggctgccgcgctgttgaaaatggcacagggagaacgtcctctgattctgccgccagat
ccagcattccgtcctcgccgcgaattccgcgatcgtgatgagtctcgtagtgattcacgt
ggcgatcgtcgccgcgatccgcgtgattctcgcgaaagccgtgacggtgaccgtccacag
cgtcgtgaacgtcgtgagtcgggtgagatggaactgtatcgtatcgaagtgggtcgtgat
gacggtgttgaagttcgccacattgttggtgctatcgccaacgaaggggatatcagcagc
cgctacatcggtaacatcaagctgttcggttcccactccacgatcgagctgccaaaaggt
atgccgggcgacctgttatcacactttacccgcacgcgtattctgaacaaaccaatgaat
atgcaattgctgggtgatgcagtagcacagccggaacgtcgtggcggtaaccgtcctgct
ggtgcgggtggcgaacgtcgtgatggcgcagcgccacgtcgctctttcggcggtggtgaa
cgccgtgaaagtaacggtaatggcggtgagcgtcgcgaacgttctttcaatcgtgatgca
gccccacgtgctccacgtcgtcgtcccgctgacgcgtaa
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