Pectobacterium parmentieri WPP163: Pecwa_0910
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Entry
Pecwa_0910 CDS
T01106
Name
(GenBank) Rhamnogalacturonate lyase
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
pwa
Pectobacterium parmentieri WPP163
Brite
KEGG Orthology (KO) [BR:
pwa00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
Pecwa_0910
Enzymes [BR:
pwa01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
Pecwa_0910
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GFIT
Motif
Pfam:
CBM-like
fn3_3
Rhamnogal_lyase
CarboxypepD_reg
CarbopepD_reg_2
SdrD_B
Motif
Other DBs
NCBI-ProteinID:
ACX86728
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Position
976965..978680
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AA seq
571 aa
AA seq
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MKRSVLLLVGAMLAPYGYSAQDNAVSLSVSGLNTVLDNGLLKVTFGEDGSAVSMVTGGKN
IVTNLSGAARDPSKTRSAYLDYYVKGVKDFVPERVEVLRNDRDMAHVAYIDDRGGLLKLE
YHLIMRRGVSGLYSYVVAENSGSQDVNISELRNVYRFDPARLDHLYSGVRQGKPLLYRQL
EASPKVQDETWRLPDGSIYSKYDFAGYMRAVPFWGVFGNGVGAWLIHGNREYFSGDALKQ
DLLVHQDAIILNYMTGSHFGTPDMKAPPGWKKFYGPWLLYINQGDTKQMLADAQRQALTE
TVSWPYQWVNDSRYAFERTQVSGRVASQQPVTVVLSSSLDEPFDMQTRGYSYQATTDSQG
NFAIPHVRPGNYHLTVYANSGTQPGVLAEQTLSVSGDKKVLPVITLPKAEPIVWAIGQAN
RQASEFRFGNEARNTRWQHEVPANLTFDIGRSDYQHDWYYAQTKPGKWDIRFALKPEKKT
YFLNVALAAASNSGMSEPSTPQLAVMVNGTTLETLTYENDKTIYRGALQSGRYHVARIPV
SSRLLKNGNNTITLQLKGGSVMYDVVTLSEE
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
gtgaagcgatctgtcttgttgttggtgggagccatgctggcaccctatggctatagtgcg
caggataatgccgtgtcgttatccgtttcgggcttgaataccgtgctggataatggcttg
ctgaaagtcacattcggtgaggatggcagcgcagtcagcatggtgacggggggtaaaaat
atcgtcaccaacctgtccggtgcggcacgtgacccgagcaaaacccgtagtgcttacctc
gactattacgttaaaggcgtaaaagatttcgtccccgagcgagtggaggtgttgcgtaac
gatcgtgacatggcgcatgtggcctatattgacgatcgcggtgggctgctaaagctcgaa
tatcacctgattatgcggcgtggcgttagcgggctttatagctatgtggtggcggaaaat
agcggaagtcaggatgttaacatcagtgaactgcgtaacgtttatcgcttcgatcctgcg
cggttagaccacctctacagcggcgttcgtcagggcaaaccgctgctttatcgccagctt
gaggcctcaccaaaggtgcaggatgaaacctggcggttgcctgatggcagcatttattcc
aaatatgatttcgctggctacatgcgtgccgtgcctttctggggcgttttcggtaacggc
gtaggggcatggctgattcacggcaatcgggagtatttctccggcgatgcgctcaagcag
gatttgctggtgcatcaggatgcgatcattctgaactatatgacgggttcgcactttggt
acgccggatatgaaagccccgccgggctggaaaaaattctacggaccgtggctgctctac
attaaccagggcgataccaagcagatgctagcggatgcacagcgtcaggcgctgacggaa
acggtgagttggccgtaccaatgggtgaacgactcccgctatgcgtttgaacgcacgcag
gttagcggacgcgttgctagccagcagccagtcacagtcgtgctttcatcatcattggat
gagccgtttgatatgcagacccgcggttattcgtatcaggcaacgacagactcacaggga
aattttgctattcctcatgtccgtccgggcaattaccatctaaccgtgtacgccaacagc
ggtacgcagccaggagtattggcagagcaaacgctgtccgtttccggtgataagaaagtg
ctaccagtgataacactgccaaaagctgaaccgattgtctgggcgattggacaggcaaac
cggcaggcgagcgaatttcgctttggtaacgaggcgcgcaatacccgctggcagcatgag
gttccggcaaatctgacgttcgatattggccgtagcgactatcagcacgactggtactac
gcacagaccaagccgggaaaatgggatatccgttttgctctaaaacctgaaaagaaaacc
tatttcctgaatgtcgctctggcggcggcgagcaatagcggcatgagtgaaccgtccacg
ccacagttggcggtcatggtcaacggcactacgctggagacgttgacttacgagaacgac
aaaactatctatcgtggtgcgctacagagcggtcgttatcacgttgcgcgtatccccgtg
tcatcccgtctcctgaaaaacggcaacaacaccatcacactgcaattaaaaggcggtagc
gtgatgtatgacgtggtgacgttaagcgaggaataa
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