Pectobacterium parmentieri WPP163: Pecwa_1022
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Entry
Pecwa_1022 CDS
T01106
Name
(GenBank) Sigma 54 interacting domain protein
KO
K12266
anaerobic nitric oxide reductase transcription regulator
Organism
pwa
Pectobacterium parmentieri WPP163
Brite
KEGG Orthology (KO) [BR:
pwa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pwa03000
]
Pecwa_1022
Transcription factors [BR:
pwa03000
]
Prokaryotic type
Helix-turn-helix
Other families
Pecwa_1022
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
GAF
GAF_2
AAA_5
Mg_chelatase
AAA
HTH_8
MCM
AAA_2
AAA_16
GAF_3
AAA_22
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ACX86839
LinkDB
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Position
1104368..1105903
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AA seq
511 aa
AA seq
DB search
MTLSINALARIAIELQMGLSNQDRFQRLINSLRQLLRCDASALLRYENQLFRPLAIDGLA
PDVLGRRFRLSDHPRLEAIARAGDVVRFPADSHLPDPYDGLIPSQEDLKVHACVGLPLFA
NQNLIGALTVDGMDPCQFDHFSDEELRLVGAMAAAALSNALLMERLERQLPAPVRAESPA
AESVEEMVGLSEPMQRLKKEVNIVAGSDLNVLIMGETGVGKELVARAIHHGSSRANHPLV
YLNCAALPESVAESELFGHVKGAFTGAIHHRTGKFEMADNGTLFLDEIGELSLTLQAKLL
RVLQYGDLQRVGDDSSLKVNVRVLAATNRDLRQAVLDGAFRADLFHRLSVFPLSVPPLRE
RSQDVALLAGFFCERSRVQLGLVRLALTAEAGALLERYDWPGNVRELEHSIYRATVLARA
GQESGEVLLGPEHFNLELPSQPVYSIASSNAIETVPAYFISGGLREATDDYQRRIIQQTL
ARHQGNWSSCARELEMDGGNLHRLAKRLGIK
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atgacgctttccattaacgcccttgcccgcatcgctatcgaactgcaaatggggttgtcg
aatcaggatcgttttcagcgtttgatcaacagcctgcgccaactgttgcgctgcgatgcg
tcggcgctgctgcgttacgaaaatcagctattccgcccgctggcgatcgatggtctggca
ccggacgtgctggggcgacgctttcgcctgtccgatcatcctcggttagaggcgattgct
cgtgccggtgacgtggtgcgttttccggcggacagccaccttcccgatccgtatgacggt
ctgatccccagccaagaggatcttaaggtacacgcctgcgttggcctgccgctatttgcc
aatcagaacctgatcggtgcgctgaccgtggacggcatggacccgtgtcagttcgatcat
tttagcgatgaagaactgcggctggtaggagcgatggcggcggcggcgctgagcaatgcg
ctgctgatggagcgtcttgagcggcagttgcccgcgccggtacgcgctgaaagcccagcg
gcggaaagcgtggaggaaatggttggcctgtcggagccgatgcagcggttgaagaaagaa
gtgaatatcgtcgcaggttccgatctgaatgtgctgatcatgggggaaactggcgtcggt
aaagagttggtggcgcgggcgatccatcatggctccagtcgcgcgaatcatcctttggtc
tatctaaactgcgctgcgctgcccgaatcggtggccgagagtgaactgtttggtcatgtg
aaaggggcgtttaccggtgcgattcaccatcgaaccggtaagtttgaaatggcggataac
ggcacgctgtttctggatgagattggcgagctgtcgttaacgctacaggcgaagctgcta
cgcgtcttgcagtacggcgatctacagcgcgtgggggatgacagcagcctgaaagtgaat
gtgcgcgtgctggcggcgaccaaccgagacctgcggcaagcggtattggatggcgctttc
cgcgccgatttattccaccggttgagcgtgttcccgctgtctgtaccaccgctgcgtgag
cgcagtcaggatgtggcgctgctggcaggtttcttctgtgaacgtagccgcgtgcagttg
ggattagtgcgtttggcgctgactgcagaagcgggcgcgctgctggagcggtacgattgg
ccggggaatgtacgtgaactggaacattccatttaccgcgccaccgtactggcgagagcg
ggacaggaatcgggcgaggtgcttttaggccctgagcattttaatctcgaactgccctcc
cagccggtttattcaatagcatcgtcgaatgctattgagacagtgcccgcgtatttcatc
agcggtggcctgagggaggcaacggatgattatcagcgtcggattatccaacaaacgttg
gcacgccaccaaggcaactggtcatcctgcgccagagaattggaaatggacggcggaaac
ctgcatcgtctggcgaagcgactgggcatcaaataa
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