Pectobacterium parmentieri WPP163: Pecwa_1080
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Entry
Pecwa_1080 CDS
T01106
Name
(GenBank) Sigma 54 interacting domain protein
KO
K11908
sigma-54 dependent transcriptional regulator
Organism
pwa
Pectobacterium parmentieri WPP163
Brite
KEGG Orthology (KO) [BR:
pwa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pwa03000
]
Pecwa_1080
Transcription factors [BR:
pwa03000
]
Prokaryotic type
Helix-turn-helix
Other families
Pecwa_1080
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
AAA_lid_14
AAA_5
Mg_chelatase
AAA_16
AAA_2
HTH_8
AAA_3
LUZP2
TIP49
nSTAND3
Torsin
AAA_7
MIPOL1_N
Motif
Other DBs
NCBI-ProteinID:
ACX86894
LinkDB
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Position
1169489..1171027
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AA seq
512 aa
AA seq
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MQHALKLALALTQQHDEASLCGWLLEAMQAAWQPQGMLLGMVDVSGRQLICQGRVHETPV
ALSLGVDDFSHPLAYALHKNQARTWDSLYGGARIEHREFQQMLISVGASCGLHALPLLSD
GGKPLAVLALLDTPARLQTLHQQGECEQLTQVFCRQLMLLRELAHTRREQVALRDSLRQI
KDEGQSRREQEKRVETTLVGQSAVMKALHQQIYQAAKHRLSVLIQGETGSGKEVVARLLH
QCSERADKPFIAINCAAIPENLIESELFGYQKGAFSGAQSNKVGLVEQANGGTLFLDEVG
DMPQAMQAKLLRVLETHSFRSLGADKEVHSDFRLIAATHQPLEQQVSDGVFRQDLYHRLC
QCLLQLAPLRERPDDIRLLCEHFIDQFADERQKHVGPLSRTFLRQLMGYDFPGNVRELRN
LLEVVCANTPDGDVLSLTSLSPELRERLMSSSVEEQDCYQHIHDLRIATQRYEAAVIEAR
LRQFQGNRLLVADSLNIPKRTLDHKCQKLEVN
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgcaacatgccctcaaactggcgcttgcgctcacccaacagcatgatgaagccagtctg
tgcggctggctgctggaggcgatgcaggccgcctggcaaccgcaagggatgctactgggt
atggtggatgtcagcggcaggcaactgatctgccaggggcgggtgcatgaaacgccagtg
gcgctgagtctgggggtggatgactttagccaccctctggcttacgcgctgcataaaaat
caggcgcgcacctgggattcactctatggcggtgcccgcattgagcaccgtgagtttcag
cagatgctgatctctgtcggggcgagttgcgggcttcacgcgctgccgctgctgtcggat
ggcggtaagccgctggcagtgctggcgctgttggatacgccggcgcgcctgcaaacgctg
catcagcagggagaatgcgaacaactgacgcaggtgttttgtcgtcaactgatgctgctg
cgtgagttggcgcatacccggcgggaacaggtcgcgctgagagattcgctccgccagatt
aaggatgaagggcagagccgtcgcgagcaggaaaaacgggtggaaaccacgttggtgggg
cagtctgccgtgatgaaagcgctacatcagcagatttatcaggcggcaaaacaccgtctt
tcggtgctgattcagggcgaaaccggttcagggaaagaagtggtggcgcgactgctgcat
cagtgttctgaacgtgccgacaagccctttattgccatcaactgtgccgcaatccctgaa
aatctgattgagagcgagctgtttggctatcaaaaaggggcgttctccggcgcgcaaagc
aacaaagtaggtctggtagaacaggctaatggtggaaccctgtttttggatgaggtcggc
gatatgccgcaggccatgcaggccaagctgttaagggtattggagacgcatagcttccgt
tccctcggtgcggataaagaggttcattctgacttccgtttgatcgccgcgacacatcag
ccgctggaacaacaggtgtctgacggggtgtttcggcaggatctctaccatcgcctctgc
cagtgtctattgcagctcgcgccgctgcgtgagcggccggacgatattcgcctgctgtgc
gagcactttatcgatcaatttgcggacgaacgacaaaagcacgttgggccgttaagccgt
actttccttcgccaattaatgggatatgactttcccggcaatgtacgggaactgcgcaac
ctgctggaggtcgtctgcgcgaatacgccggacggcgatgtgctgtctctgacatcgttg
tcccccgaactacgtgagcgactgatgagcagttcggtggaggaacaggattgctatcag
cacattcacgatttacgtatcgccacacaacggtatgaagcggctgtgattgaagcacgt
ctgcgccagtttcagggcaaccgcctgctggtggccgatagcctcaatatccctaaacgt
actcttgaccacaaatgccagaagctggaggtaaattga
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