Pectobacterium parmentieri WPP163: Pecwa_1167
Help
Entry
Pecwa_1167 CDS
T01106
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
pwa
Pectobacterium parmentieri WPP163
Brite
KEGG Orthology (KO) [BR:
pwa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pwa03019
]
Pecwa_1167
Enzymes [BR:
pwa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Pecwa_1167
Messenger RNA biogenesis [BR:
pwa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Pecwa_1167
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
Helicase_C
DEAD
AAA_22
ResIII
HA2_N
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ACX86981
LinkDB
All DBs
Position
1257811..1260255
Genome browser
AA seq
814 aa
AA seq
DB search
MILPPVSAVLDDVITALHTAPQVLLNAPTGAGKSTWLPLQLLQQGNLNGRIIMLEPRRLA
AKSVAWRLAQQLGEEPGQTIGYRMRSESCVSNATTLEVVTEGMLTRLLQQDAELQGVALI
ILDEFHERSVQADLALALLLDVQQGLRDDLKLLIMSATLDNARLAMLLPEAVCVVSEGRS
YPVERCYAPLNSQERLEEGVARQVRRLLSEEDGSLLLFLPGVAEIRRVQALLENSVSSET
DLCPLYGALTLAEQQKAILPAEPGRRKVVLATNIAETSLTIEGIRLVVDSGLERVASFDV
KSGVTRLVTQRISQASMVQRAGRAGRLSPGICWHLCSREQAERAAVQSEAEILSSDLSSV
WLDLLQWGCTDVAQLTWLDTPPAPALYAARQLLCQLGITDEHERLTAEGRKIATLGSDAR
LATMLYAASQQSSGALATAGCLAAILEEPPRSGSINLADWLHRPLPHWLRRAKQLTRRLS
MTSGNIDDGEADWLLAQAFPDRIARRRSQDGRYQLANGSGAMMSADDALSGNEWLLAPAL
LQNSQSADARILLALPLDIERLERRLPGLINERNVVHWDEEKGTLRASQRDQIGCLILRT
RPLNKPSDEALQQAMLFWIREQGLKALNWDAAALQLRARLQCACQWLPEVDWPQVDDDTL
LATLEIWLQPSLSGVRDLRALHQINLSDALLRLLDWSLRQRLDSALPTHYTAPGGSRLPI
AYYDDKPPVLSVRMQEMFGEQQSPLLAEGRVALVLELLSPAQRPLQITRDLAAFWQGTYR
EVQKEMKGRYPKHIWPDDPANTAPTRRTKKYQNH
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
gtgattttaccgcccgtcagcgccgtgctggatgatgtgataacggcgctacatactgcg
cctcaggtgctgctcaatgccccaacgggggcggggaaatcaacttggctgccgttgcaa
ttactgcaacagggcaatttgaatgggcgcatcatcatgctggagccgcgccgactggcg
gcgaagagtgttgcctggcggttggcacagcagctaggtgaagaaccggggcaaacgata
ggctatcggatgcgctcggaatcctgcgtgagcaatgcaacgacgctggaagttgtcact
gaaggtatgctaacccgcttgctgcaacaggatgcggaattgcaaggcgtagcgctgatt
atccttgacgaattccatgagcgtagcgtgcaggccgatttggcattggcgttgctgctt
gatgtgcaacaagggctgcgtgacgatttaaaactgctgattatgtcggccacactcgac
aatgcacggctggcgatgctgctgccggaggctgtctgcgtggtctccgaaggtcgcagc
tatccggtagaacggtgttatgcaccgctaaatagtcaggaacgtttagaagagggcgtt
gcacgacaggtccggcgtttgctcagtgaggaagacggctctctgttgctgtttctgccc
ggcgtcgcagaaattcgccgcgtgcaggcgctgctggagaatagcgtgtcgagtgagacg
gatctctgtcctttatatggcgcattgacgctggcggaacagcaaaaggccattcttcca
gcggagccgggtcgtcgtaaggtggtgttagccactaatattgcggaaaccagtttgaca
attgaaggtatccggctggtggtggacagcggccttgaacgcgtagccagctttgatgtg
aaaagcggcgtcacccggctggtgacacagcgcatcagtcaggcatctatggtccagcgc
gcggggcgtgcgggacgtttaagccccggtatttgctggcatctgtgctctcgtgaacag
gcagaacgtgcggcagtacaaagcgaagccgagatcctgagtagtgatttaagcagcgtc
tggctggatttactacagtggggctgtaccgatgtggcgcagttaacctggctggatacg
ccgccagcacctgcgctttatgccgctcgtcaactgctgtgccagcttggcatcactgat
gaacatgagcggttgaccgccgaggggcgcaagattgcgacactcggcagcgatgctcga
ttggcaacgatgctgtatgccgcgtcacagcaaagttcgggtgcgttggcgaccgcaggg
tgtctggcggcgatacttgaagagccgccgcgtagcggatcgatcaatctggctgactgg
ctgcatcgtccattaccgcactggctgcggcgagcaaaacagttgacgcgccgtttatcg
atgacctcggggaatattgacgacggcgaagctgactggctgctggctcaggctttccct
gaccgtatcgcccggcggcgcagtcaggatgggcgttaccaactcgctaacggtagcggc
gcgatgatgtcggcggatgacgcgttgtcaggtaacgaatggctgctggcaccggcgcta
ttgcagaatagtcagagtgcagacgcgcggatcctactggcgttgccgttggatattgaa
cggctggaacggcggttacctggattaataaatgaacgtaacgtggtgcactgggatgaa
gaaaagggtactctgcgcgccagccagcgcgaccagataggctgcctgattctgcgaacg
cgcccgttgaataagccttccgatgaggcattacagcaggcgatgctattctggattcgg
gagcaggggcttaaagcattaaattgggatgcagcagcgttgcagctacgcgcgcgccta
cagtgcgcttgtcagtggttacctgaggttgactggccgcaagtggatgacgacacgcta
ctggcaacgctggagatctggttgcagccgtcactgtctggcgtgcgcgatttacgtgcg
ctgcaccagattaatttgagcgatgccctgttgcggctgttggactggtcgctgcgccag
cggttggatagcgcgctacccacgcactacaccgcgcccggcgggagtcgtttgcccatt
gcctattatgacgataagccaccagtgctgtcggtacggatgcaggaaatgttcggcgag
cagcagagtccgctgctggcggaaggtcgtgtggcgctggtgctggaacttttatcacca
gcacaacgtccattacagattacgcgggatttagccgcattttggcaaggcacttaccgc
gaggtgcaaaaagagatgaaggggcgttaccccaaacatatctggccggacgatccggcg
aatacggcgccgacgaggcgtaccaagaaatatcagaatcactaa
DBGET
integrated database retrieval system
