Pectobacterium parmentieri WPP163: Pecwa_2004
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Entry
Pecwa_2004 CDS
T01106
Name
(GenBank) integration host factor, beta subunit
KO
K05788
integration host factor subunit beta
Organism
pwa
Pectobacterium parmentieri WPP163
Brite
KEGG Orthology (KO) [BR:
pwa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pwa03032
]
Pecwa_2004
03036 Chromosome and associated proteins [BR:
pwa03036
]
Pecwa_2004
03400 DNA repair and recombination proteins [BR:
pwa03400
]
Pecwa_2004
DNA replication proteins [BR:
pwa03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
Pecwa_2004
Chromosome and associated proteins [BR:
pwa03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
Pecwa_2004
DNA repair and recombination proteins [BR:
pwa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
Pecwa_2004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_2
Motif
Other DBs
NCBI-ProteinID:
ACX87783
LinkDB
All DBs
Position
2182412..2182696
Genome browser
AA seq
94 aa
AA seq
DB search
MTKSELIERLAGQQSHIPAKVVEDAVKEMLEQMASTLAEGDRIEIRGFGSFSLHYRAPRV
GRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG
NT seq
285 nt
NT seq
+upstream
nt +downstream
nt
atgaccaagtctgaacttattgaaaggcttgctggacagcaatctcatatcccggccaaa
gtggttgaggatgcagtgaaagaaatgcttgaacaaatggcctctacgttagccgaaggc
gaccgtattgaaatccgtgggtttggcagtttttcacttcactaccgtgcaccgcgtgta
ggtcgtaatccgaaaacgggtgataaagttgagctggaaggtaagtacgtccctcacttt
aagccgggcaaggaactccgcgaccgcgctaatatttatggctaa
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