Pectobacterium parmentieri WPP163: Pecwa_2232
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Entry
Pecwa_2232 CDS
T01106
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pwa
Pectobacterium parmentieri WPP163
Brite
KEGG Orthology (KO) [BR:
pwa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pwa03016
]
Pecwa_2232
Enzymes [BR:
pwa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Pecwa_2232
Transfer RNA biogenesis [BR:
pwa03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Pecwa_2232
BRITE hierarchy
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Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
ACX88002
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All DBs
Position
2423583..2424707
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AA seq
374 aa
AA seq
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MNYQLITSDIGLQQICAQAQRFPQVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLTI
TDWAPFQALLRDEQVTKFLHAGSEDLEVFLNTFGTLPTPFIDTQILAAFLGKPLSYGFAA
LVADYMGVTLDKSESRTDWLARPLSEKQCDYAAADVFYLLPMAIQLVTDTEAAGWMNAAL
DECLLLCQRKQDILAPALAYREFGNAWQLRGRNLACLQRLAEWRLRKARERDSAVNFVVR
EENLLQVARCLPSSLGELSSLGLSGPEIRYHGKTLLDCVAQTDGIADVDCPPPVINLIDH
PGYKKAFKDIKALVQRASEQSGLSAELLASRRQINRLLNWHWKLAAQDGNTPEMLSGWRG
QIYGDELRDIVQGY
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
ttgaattatcagttgatcacttccgacatcgggttacaacagatctgcgcccaggcgcaa
cgttttccgcaggtggcattggacacggagttcgtcagaactcgcacgtattacccgcaa
ttagggttgattcaattgtatgacggtgaacagctttcgcttatcgatccgttaacgatt
accgactgggctccttttcaggcgttgctgcgtgacgagcaggtcactaaattcctgcat
gcaggcagcgaggatctggaagtgtttctcaatacgtttggaacactgccgacgcctttc
attgatacacagattctggccgcatttttaggcaagccactttcttatggctttgctgcg
ctggtggccgactacatgggcgtgacgctggataaaagcgagtcgagaacggactggctc
gcccgtccgctgagcgaaaaacagtgtgattacgcggccgctgatgtgttctacctgctg
ccgatggccattcaactggtaacggataccgaagccgcggggtggatgaacgccgcgttg
gacgagtgtctcctgctttgtcagcgtaaacaggatattttagccccggcattggcctat
cgtgaatttggcaacgcctggcagctacgtggccggaatttggcgtgtctccaacgtctg
gctgagtggcgtttgcgcaaagcgcgtgagcgggacagcgcggtgaattttgtcgtgcgt
gaagagaatcttttgcaagtggcgcgttgcctgccgtcttcgctgggggagctgagttct
ctggggctaagcggcccggagatccgctaccacggaaaaacgctgctggactgtgtggca
caaacggacggcattgctgacgtggattgcccaccgccagtgattaatctgatagaccat
cccggttataaaaaagcgtttaaagatatcaaggcgttggtacagcgggcgagtgaacag
agcggcttatccgccgaattattggcatcacgtcgtcaaattaatcgcctgctgaactgg
cactggaaattagcggcgcaagacgggaacacaccggaaatgttgtccggctggcgtggc
cagatatatggcgatgaactgcgtgacatcgtacagggctattaa
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