Pectobacterium parmentieri WPP163: Pecwa_2816
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Entry
Pecwa_2816 CDS
T01106
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pwa
Pectobacterium parmentieri WPP163
Pathway
pwa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pwa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pecwa_2816
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pwa03019
]
Pecwa_2816
03009 Ribosome biogenesis [BR:
pwa03009
]
Pecwa_2816
Enzymes [BR:
pwa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Pecwa_2816
Messenger RNA biogenesis [BR:
pwa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Pecwa_2816
Ribosome biogenesis [BR:
pwa03009
]
Prokaryotic type
rRNA processing factors
Pecwa_2816
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
ACX88569
LinkDB
All DBs
Position
3079941..3083306
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AA seq
1121 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPSNYASHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALGSLQLPDGMGLIVRTAGVGKSAEAL
QWDLAFRLKHWDAIKKAAEGRSAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKILELA
KEHISALGRPDFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDSVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLS
LSILRLIEEEALKENTKEVHAIVPVQIASYLLNEKRDAVNAIETRQGGVRAIIVPHDGMQ
TPHYSVVRVRKGEEKPTLSYLLPQRLETETQQLQDEQTIERKQPEQPALATFSMAEMPEE
TTPPVAKATPAVVKAAEETQPGLISRFFGALKSVFASEPAVKAADNVDEKKAEEEKSTEG
QRSERRNSRRQGNNRRDRGSRDNRDNRDNRDNRDNRDNRDNREQRDDQRRNKRQNDETVT
ETRVAENAEKAGSEEQPRREPRAERQRRRQDERRPAPAEEKVQPATADSDDNAADQDKPT
QVMQRRQRRQLTQKVRVQSEAQQDTLSDNTAPVSEAPEQVQSYAKPSDAVVDGNESDNEQ
NDANRSNGENGGMPRRSRRSPRHLRVSGQRRRRYRDERYPSQSPMQLEFAAASPEMASGK
VWVSYPVAQPQQAESQPLEEDVAAIETPLLPVVVDVAVTAQVDTAESNAIENVAGVTETV
VQEETVVTATAQSADVVQDSDIADVEVSAADQNTIVEPVTEHTAIDDVIAPVAVSVVEEV
KAAEVDDTAQTTEDTQTVEAVVAVETAVAEEKSADDIAADTTETVDVAEPVSTPVVSAVQ
EISQPQSVQDEPAIATSAQAVVEEPVPSVTKAVTVIEQPRYKLHATAPMTKAPAPSYHSE
PARHSDWVRPAYPFSGKGSAGGHAAVNQSTAPATKPTPANE
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcaactcagcaggaagagttgcgtgttgccttggttgat
ggtcaacggctgtatgatttggatatcgaaagtccaggccatgagcagaagaaagcaaat
atctacaaaggtaagatcactcgtatcgaacccagtcttgaagcagcctttgttgattac
ggcgctgagaggcacggtttcctccctcttaaagaaattgcccgcgaatacttccccagt
aactatgcttcccatggtcggcctaacattaaagacgtgttacgtgaaggtcaggaagtc
attgttcaggtggacaaagaagagcgtggcaataaaggggcggcactgaccacctttatc
agcctggcgggtagctatctggtcttaatgccgaataaccctcgagcaggcggtatctcg
cgccgcatcgaaggcgatgaccgtaccgaactcaaagaagcgttgggatcgttgcaactg
cccgatggcatggggctcattgttcgtacagccggcgtgggtaaatccgctgaagcactg
caatgggatctggctttccgtctgaaacactgggacgcgatcaaaaaagccgcggaaggt
cgctcggcaccgttcctgattcatcaggaaagtaacgtgatcgtccgtgctttccgtgat
tatctgcgccaggatattggcgagattctgatcgacaacccaaaaattctcgaactggcg
aaagaacatatttctgcgctgggtcgccccgatttcagcagcaaaatcaaattgtacagt
ggtgaaatcccacttttcagccactatcagatcgaatcgcagattgaatctgctttccag
cgtgaagtgcgtctgccatccggcggctctatcgttatcgataccactgaagcactgact
gcgattgatatcaactccgcccgtgcaacacgcggtggtgatattgaagaaactgcattt
aatactaacctagaagccgcagatgaaattgcccgtcaacttcgcctgcgtgacctcggt
ggtctaatcgtcatcgacttcatcgatatgacccccgtccgccaccagcgtgaagttgaa
aaccgcctacgcgattcagtacgtcaagatcgtgcgcgtattcagatcggccggatttcc
cgcttcggtctgttggaaatgtcacgtcaacgcttgagtccttcactgggtgaatccagc
catcatgtttgcccacgctgtagcggcacaggcacgattcgtgacaatgaatcgctttca
ctgtcgattcttcgcctgattgaagaagaagcgctgaaagaaaacaccaaagaagttcat
gcgattgttccagtccagattgcgtcttatctgctgaacgagaagcgtgacgccgttaac
gccattgagacacgccagggcggcgtacgtgcgatcatcgtgccacacgacggcatgcaa
acaccgcactactccgtggttcgtgtccgtaaaggcgaagaaaagccaacactcagctat
ttgctgcctcagcgtttggaaacagaaacgcagcagttgcaagacgaacaaacgatcgag
cgtaaacagcctgagcaacctgctttagcaacgttcagcatggctgaaatgcctgaagaa
accacgccaccagttgccaaagcgactccagcagtagtgaaagccgcggaagaaacgcag
cctggtcttattagccgtttcttcggtgctttgaaaagcgtctttgcttctgaaccagcc
gtaaaagctgcggataacgttgacgagaagaaagctgaagaagaaaaatctactgaaggc
caacgctctgaacgtcggaattcacgccgtcagggtaataatcgccgtgaccgtggctct
cgtgacaatcgtgacaatcgtgacaatcgtgacaatcgtgacaatcgtgacaatcgtgac
aatcgtgaacagcgtgatgatcagcgccgtaacaagcgacaaaatgatgaaacggttact
gaaactcgcgttgcggaaaatgcggagaaagcgggttcggaagaacagccacgccgtgaa
ccgcgagctgaacgtcagcgtcgtcgtcaggacgagcgccgcccagcgccagcagaagaa
aaagttcagccagcgaccgcggattccgatgacaatgcagccgatcaggataaacctact
caggttatgcagcgtcgccaacgtcgtcagttgacgcagaaagtacgcgttcagtctgaa
gcgcagcaggatactctctctgataacacggcaccggtttctgaagcaccagagcaggtt
caatcttacgctaagccaagcgatgctgttgtagacggtaacgagagcgataacgaacaa
aacgatgcaaatcgtagcaatggcgaaaatggcggtatgccgcgtcgctcacgccgttcg
cctcgccacctgcgtgtcagcggccagcgtcgtcgtcgctatcgcgatgaacgttaccca
tctcagtcgccgatgcagttggaatttgctgctgcatcaccggagatggcatcagggaaa
gtgtgggtcagctaccctgtcgcccagccacagcaggctgaaagccaaccgttggaagag
gacgtggcagctatcgaaacaccgctgttacccgtcgttgtcgacgtcgctgtgactgca
caagtcgataccgctgaatctaacgcgattgaaaacgttgcaggcgttactgaaacagtc
gttcaggaagagactgttgtaacagcaacagcgcaatccgcggacgttgttcaggacagc
gatatcgctgatgtcgaagtgagtgcggcggatcaaaacaccatcgtcgagccagttact
gagcacacggcgatcgatgatgtcatcgcgccggttgcagtaagtgtggtcgaagaagta
aaagccgctgaggttgatgatacagctcagacaactgaagacacacagaccgttgaagct
gtcgttgctgttgaaactgctgttgctgaagaaaaatcagcagatgacatcgctgctgat
acgaccgagacagttgatgtggcagaaccggtgtctaccccggtggtttccgcagtacag
gaaatcagccagccacaaagcgttcaggatgagccagcgatcgctaccagcgcacaagct
gttgtagaagaacctgttccgagcgtaacaaaagcagtaaccgtcattgaacagcctcgc
tataaactccatgcaacggcaccaatgactaaagctccggctccgtcataccactccgag
cctgctcgacacagtgattgggtccgtccagcctatccgttctcaggaaaaggctcggca
ggcggtcatgccgcagttaatcagtcaactgcgccagcaaccaagcctacgccagccaac
gagtaa
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