Pectobacterium parmentieri WPP163: Pecwa_3304
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Entry
Pecwa_3304 CDS
T01106
Name
(GenBank) exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
pwa
Pectobacterium parmentieri WPP163
Brite
KEGG Orthology (KO) [BR:
pwa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pwa03400
]
Pecwa_3304
DNA repair and recombination proteins [BR:
pwa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Pecwa_3304
Archaeal homologous recombinant proteins
Pecwa_3304
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcC_Walker_B
AAA_29
ABC_tran
AAA_21
SMC_N
nSTAND3
cobW
NTPase_1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ACX89045
LinkDB
All DBs
Position
3606517..3610200
Genome browser
AA seq
1227 aa
AA seq
DB search
MKILSLRLKNLNALKGEWKIDFTKEPFSSNGLFAITGPTGAGKTTLLDAICLALYHETPR
LGLLSASQNDLMTRDTAECLAEVEFEVKGVGYRAFWSQRRARNVPDGNLQSPKAELALIE
GGKILCEKLNDKKEMITQLTGLDFGRFTRSMMLSQGQFAAFLNAKADDRAELLEELTGTD
IYGLISEHVYDKHKQANIALSTLQARASGIQLLTDEQRQQVEVQLAELTQQEQQGNIERE
QALTTLRWFEQLTRQQTQLTNTQLQHASAESAIQQAKPQLDRLANGEPAEKLRPLHQERE
RYRQESLALTQQIEQLSGKQASGHTALATLRQQEEKAEQGVIQHKQVLQQQELLINEQVV
PLDHRIATLQQQKNQQQDELAKTQLRLQADENKQTQIAAEQQQAKQLLEQIQAYRQQHAH
HQQWGEQLPLWRTQFLQLRQLQDEQQKLSQKQTQHTEQAAALQQEAATLTAQQREQQTVV
DAARQQFIQHDEMRKNQEAHQPLAALRQRFNQLIDQQATRRQLATASDQFQRLHTRKQQH
LARQDEIQGHISQSEILRKQQQSDHEQRSQHLADLEMLYRQEERIVKLEAERQRLQAGEA
CPLCGSTEHPAIERYQALQPSETQKRLTARQQDVKQLTMALANTTAQLASLGQQREQLQQ
EIAQLDSEHQTLLQQWQDVSERLQVNYTLEQQNETAAWLTQRETEEQDIRQHITAHEQLQ
KQWQESKDSLTVAEALQRELDQKTVLNTQQRTSLNDTQADTLQSQQNTQQRLAQHTQEIT
QTLANTNLPLPEATAQDDWLAQRNSEWQIWKTKEQDQSRLIPRLATLESDLQYLSHSVTE
TTQQLQAQQQQLEQRTALLNTNQQERLTLFGDRQIAAVREQLQRTSQQYDNALRLAQLAR
QQAETTLSRLTGELTRTQQQYEQSMHQRDSATERFTQALQQSAFADETTFLNALLAEQER
QTLQVWKEKLYQSLQQAAALHQQAERELLAHQQKRPTSLLEDATQEAVQQQLATLDETLH
FTVRQQGEIQRQLNDDRQQRQNQQDLLNEIAQSQQKYDDWSCLNTLIGSQSGHKFRKFAQ
GLTLDHLVYLANLQLSRLHGRYMLKRKPGDDLELLVVDTWQADAERDTRTLSGGESFLVS
LSLALALSDLVSHKASIDSLFLDEGFGTLDAETLDIALDALDNLNASGKTIGVISHVDAM
KERIPVQIKVQKVNGLGVSKLAPQYAV
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattctcagtctgcgcttaaagaatctcaacgcgctgaaaggcgaatggaagatc
gacttcacaaaagagccattttccagcaacggcttgtttgccattaccggcccaaccggc
gcaggaaaaaccacgctgttggatgccatctgtctggcgctgtaccatgaaacacctcgc
ttgggtctgctttccgccagccaaaatgatctgatgacccgcgacacggcagaatgtctc
gccgaggtagaatttgaggtgaaaggcgtgggataccgcgccttctggagccaacgtcgg
gcgagaaatgtcccagacggcaatttacagtcccccaaggccgagctcgcactcattgaa
ggcggcaaaatcctgtgtgaaaagctcaatgataagaaagagatgatcacacaactcacc
gggttagactttggccgtttcacacgttctatgatgctgtcgcaggggcagtttgccgcc
ttcctcaatgcgaaagccgacgaccgggcggaactgctggaagagctaaccggcacggac
atttacggcctgatttccgagcacgtctatgacaagcacaaacaggcaaacatcgcgttg
agcacgctacaggcacgcgcatcaggtattcagttgctgaccgatgagcagcgccagcag
gtggaagtccagcttgccgaactgacccagcaagagcaacagggcaacattgagcgtgag
caagcactgactacgctacgctggtttgagcaactgacgcggcagcaaacacagctcacc
aacacgcagttgcaacacgcaagtgccgaatccgccattcagcaggccaagccgcagctc
gacaggttagccaacggcgaaccagcagaaaaactgaggccgttacatcaggaacgagaa
cgttatcgacaggaatcccttgcgctcactcagcagattgaacaactgtcaggaaagcag
gcctctgggcacactgcgctggcaacgttacgccagcaggaagagaaagcagagcagggc
gttattcagcacaaacaggtgctgcagcagcaagagttattgatcaatgaacaggttgta
ccgcttgaccatcgtattgccacgctgcaacagcaaaaaaaccaacagcaggacgaattg
gcaaaaacacagcttcgcctacaagctgacgaaaacaaacaaacgcagatagcagcggaa
caacagcaggccaaacaactgcttgaacagattcaagcttatcgccagcaacacgcacat
catcagcagtggggagaacaacttcccctgtggcgtacacagtttctgcaattgcgccag
cttcaggacgagcagcagaagctgagccaaaagcagacgcaacacaccgaacaagcggca
gcgctccaacaggaggctgcaacgctgacggcgcagcagcgtgaacaacaaacggtcgtt
gatgcagcccgtcagcaattcatacaacacgatgaaatgcggaaaaatcaggaagcgcat
cagccgcttgcagctctacgccagcggtttaatcaactcatcgatcaacaagccacacgc
cggcagctcgcaacagccagcgaccagttccagcgccttcatacgcgtaagcagcagcac
ctcgccaggcaagacgagatacaagggcatatcagccaatcagaaatattacgaaaacag
cagcagtctgatcatgagcagcgcagccagcatttggccgatctggaaatgctgtaccga
caggaagaacgtatcgttaaactggaagccgaaaggcagcggctacaggccggagaagcg
tgccctctgtgcggctcaaccgagcatccagcgattgaacgctatcaggcgttacaaccg
tctgaaacccaaaagcgcctgacggcacgacagcaggacgtgaaacagttaacaatggcg
ctggcgaatacgactgcacaactcgcctcgctggggcagcagcgggaacagttgcaacaa
gagatcgcacaactcgatagcgaacatcaaaccctgctgcaacagtggcaagatgtcagt
gagcgcttacaagttaactacacgttggaacagcagaatgaaaccgcagcctggcttacg
caacgcgagaccgaggagcaggacattcgacagcacattaccgcacacgagcagttgcaa
aaacagtggcaggaaagtaaggattcactgacggttgcagaagccctacagagggaactg
gatcagaaaactgtgctgaatacccagcaacgaacttcgctaaacgatacgcaggcagat
acccttcagtcgcagcaaaatacgcagcaacggctcgcgcagcacactcaggaaatcacg
cagacgctggcaaacacgaatctgcctcttccggaagccactgcacaggatgactggttg
gcacagcgcaacagcgagtggcaaatatggaaaaccaaagaacaggatcaatcccgctta
attccccggttagccacgctggaaagcgatcttcagtatctgagccacagcgtgaccgag
acaacgcagcaattacaggcgcagcaacagcaactggagcagcgcaccgctctgctcaat
acgaaccagcaggaacgactgacgcttttcggcgacaggcaaatcgccgcagtacgcgag
cagctacaacgaactagccagcaatatgataatgcgcttcggttagcgcaattagcacgt
cagcaggctgaaaccacgttgagccgcctgacgggagagctaacccgcacgcaacagcag
tatgagcagagcatgcatcaacgcgatagtgcgactgaacgattcactcaggctttgcag
caaagtgcttttgctgatgaaaccaccttcctgaatgcgctgcttgctgagcaggaacga
cagaccttgcaggtatggaaggaaaagctgtatcagagtttgcagcaggcagcagcactt
caccagcaggctgaacgggagctgctcgcccatcaacaaaagcgaccaacttctctgctg
gaagatgccacacaagaagcagtacagcagcagttggcaacgctggatgaaacgctgcat
ttcactgtgcggcagcagggagaaattcagcgtcaactgaacgacgatcgacaacagcgt
caaaatcagcaggatttgctcaatgagatcgcccaaagtcagcaaaagtatgacgactgg
agctgtcttaatacgctcatcggctcacaaagtgggcataaattccgtaagtttgcccag
gggctcaccttggatcatctggtttatctcgccaatctacagctctctcgtctgcacggg
cgctatatgttgaagcgaaaacccggtgacgatctggaactgctggtggtggacacctgg
caagcagacgccgaacgcgatacgcgcacgctgtccggcggcgagagctttctggtgagt
ctatcgctggcgctggcgttatccgatctggtcagccataaagccagcatcgactctctg
tttctggatgaaggcttcggcacgctagatgccgagacgctggatatcgcgctggatgcg
ctggataacctgaacgcctctggcaaaaccatcggcgtcattagccatgtcgacgccatg
aaggagcgtattccggtacagatcaaagtgcagaaggttaacggtctgggcgtcagcaag
ctagcaccgcagtatgccgtgtag
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integrated database retrieval system
