Pectobacterium parmentieri WPP163: Pecwa_3388
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Entry
Pecwa_3388 CDS
T01106
Name
(GenBank) exodeoxyribonuclease V, alpha subunit
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pwa
Pectobacterium parmentieri WPP163
Pathway
pwa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pwa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Pecwa_3388
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pwa03400
]
Pecwa_3388
Enzymes [BR:
pwa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Pecwa_3388
DNA repair and recombination proteins [BR:
pwa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Pecwa_3388
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
UvrD_C_2
Viral_helicase1
NAT10_TcmA_helicase
AAA_11
SH3_13
AAA_22
SLFN-g3_helicase
UvrD-helicase
nSTAND3
AAA_16
DEAD
UvrD_C
AAA_28
Herpes_Helicase
T2SSE
CbiA
PhoH
ResIII
MukB
FtsK_SpoIIIE
DUF87
SRP54
AAA_17
AAA
TrwB_AAD_bind
Zeta_toxin
NTPase_1
ATPase
Motif
Other DBs
NCBI-ProteinID:
ACX89126
LinkDB
All DBs
Position
complement(3717588..3719444)
Genome browser
AA seq
618 aa
AA seq
DB search
MIVLLEMAQARRLLRPLDIQFARMLADETQPDLLLAAACLSAHSGAGHVCLPLGNLQAQT
LFDGRDPELAQQLLAGVGLNTAAAWQQRLLTSDAVSDGSKPTPLVLQGEKLYLQRSWQSE
GRVAQFIASERDTVSADEPAIRAVLDRLFPDAGEEIDWQKVAAAVALTRRIAIISGGPGT
GKTTTVAKLLAALIELNTGEALRIQLAAPTGKAAARLTESLGLALHRLAVDQTQREAFPQ
EATTLHRLLGAVTDSQRLRHHQENPLHLDVLIVDEASMVDLPMMANVIAALPAQARIIFL
GDRDQLASVEAGAVLGDICRFAEAGYSRGRTQQLQRLTGCMLDGSGPEGQTTVGDSICLL
RRSYRFDPHSGIGQLALAVNGGDEARVRVVLNGEFADITCSPLAEAEEYQVMLAQCVEGY
RDYLQLITVGAPPDAVLLAFQRYRQLCALREGPFGVAGLNQRIEQALHQSGLIQRSRNPL
NRWYPGRPVMIERNDAALGLFNGDIGIAMMGENRELRVFFPLPNGETKDVTPSRLPPHET
AYVMTVHKSQGSEFDHTALVLPNHYLPVLTRELVYTAITRARQRLSLYTDVRILCRAVKT
PTQRYSGLEERISALMGH
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgattgtcttgcttgaaatggcgcaggcgcggcggttgctgcgcccgctggatatacag
tttgccagaatgctggcagatgagacgcagcccgatctgctgctggcggcggcctgcctg
agtgcacattcgggcgcgggacacgtgtgtttacctctgggaaatttgcaagcacagacg
ctgtttgatggccgcgatcctgaactggcacagcagttgctcgcgggagttgggctaaac
acggctgccgcctggcaacagcgtttgctgacgtccgatgccgttagcgacggtagcaaa
ccgacgccgctggtgctgcaaggtgaaaagctttatttacagcgtagctggcagagtgag
ggccgcgtggcgcagttcattgccagtgaacgcgatacggtatcggctgatgaaccggcg
atccgggcagtgctggatcggctgtttcctgacgcgggcgaagagattgactggcaaaaa
gtggccgccgccgttgccttgacgcgccgtattgcgattatttctggtggtccgggaacg
gggaaaaccacgacggttgccaagctgttggcggcgctgattgagttgaatacgggagag
gcgttacgtattcaattggctgcgcctactggaaaggcggccgcacggctaacggaatca
ttggggctggcattgcaccgtctggcggtggatcagacgcagcgagaggcgtttccacag
gaagcgacaacactgcatcggcttttaggcgcggtgacggatagccagcggctgcgtcac
catcaggaaaatccactgcacctggatgtgctgattgtggatgaggcgtcgatggtcgat
ctgccgatgatggcgaatgtgatagccgcgcttccggcacaggcccgaattatctttctg
ggtgaccgcgatcagctagcgtccgtcgaggcgggggcggtgttaggtgacatctgccgt
tttgccgaggctggctatagccgtggacgaacgcagcaattgcagcgcctgacgggctgt
atgctggatggaagcggtcctgaagggcagacgacggtgggtgacagtatctgcctgtta
cgccgcagctaccgcttcgatccgcattccggtattgggcaactggcgctggcggtgaac
ggtggcgatgaggctcgcgtgcgtgtggtgctgaacggcgagtttgccgatatcacctgt
agtccgttagccgaagctgaagagtatcaggtgatgttggcgcagtgtgtcgaggggtat
cgtgattatctacagcttatcactgtgggagcgccgccggatgcagtgttacttgccttc
cagcgttatcgtcaactgtgtgcgttgcgtgaagggccgtttggcgtagccggtctcaat
cagcgtatcgagcaggctttgcatcagtctgggctgattcagcgcagccgcaatccgctt
aaccgctggtatcccggccgaccggtgatgattgagcgtaatgatgccgcgttgggtctg
tttaatggtgatatcggtattgcaatgatgggggaaaacagggagctgcgcgtatttttc
cccttgccgaatggcgaaaccaaagatgttacgccaagccgtctgccgccgcatgaaacg
gcttatgtgatgacggtgcataaatcgcagggatcggagttcgatcatactgcgctggta
ctgccgaaccattacttacccgtgctgacccgagagttggtgtataccgccatcacgcgt
gcgcgccagcgtttgtcgctctataccgatgttcgcatactctgtcgggcggtgaaaacg
ccaacacagcgctatagcggcttggaagagagaattagcgcactaatgggacattga
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