Pectobacterium parmentieri WPP163: Pecwa_3975
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Entry
Pecwa_3975 CDS
T01106
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
pwa
Pectobacterium parmentieri WPP163
Pathway
pwa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pwa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Pecwa_3975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pwa03021
]
Pecwa_3975
03400 DNA repair and recombination proteins [BR:
pwa03400
]
Pecwa_3975
Enzymes [BR:
pwa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Pecwa_3975
Transcription machinery [BR:
pwa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Pecwa_3975
DNA repair and recombination proteins [BR:
pwa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Pecwa_3975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
ACX89706
LinkDB
All DBs
Position
complement(4397272..4398261)
Genome browser
AA seq
329 aa
AA seq
DB search
MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADIIHDGD
VEIVKPQHLICHLTDENASISMRIKVQRGRGYVPASARIHTEEDERPIGRLLVDACYSPV
ERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQP
EVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL
TEIKDVLASRGLSLGMRLENWPPASIADE
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgcagggttctgtgacagagtttctaaaaccgcgcctggttgatatcgagcaagtgagt
tcgacgcacgccaaggtgacccttgagccattagagcgaggcttcggccatactcttggc
aacgcactgcgccgtattctgctttcatccatgccaggttgcgcggtgaccgaggttgag
attgatggtgtactgcatgagtacagcaccaaagaaggcgtacaggaagatatcctggaa
atcctgctcaacctgaaagggctggcggtgagagttcaaggcaaagatgaagttattctt
accctgaataaatctggcattggccctgtgactgcagccgacatcatccatgatggtgat
gtcgaaatcgtcaagccgcagcacttaatttgccacctgaccgatgaaaacgcatctatt
agtatgcgtatcaaagttcaacgtggtcgtggttatgtgccggcatctgcccgtattcat
acggaagaagatgagcgcccgattggtcgtctgttagttgatgcttgctacagccctgta
gagcgtattgcctacaatgttgaagcagctcgcgtagaacagcgtactgacttggacaag
ctagtcatcgagatggaaaccaatggtacgatcgatcctgaagaggcgatccgccgtgcg
gccaccattctggctgaacaacttgaagcttttgttgacttacgtgatgttcgtcagcca
gaagttaaagaagagaaaccagagttcgatccgatcctgctgcgccctgttgacgatctg
gaattgactgtccgctctgctaactgccttaaggcagaagctatccactacatcggtgat
ctggtacagcgtaccgaggttgagctgctcaaaacgcctaacctgggtaaaaaatctctt
actgagattaaagacgtactggcttcccgtggtttgtctctgggcatgcgcctagaaaac
tggccacctgcaagcattgctgatgagtaa
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