Pectobacterium parmentieri WPP163: Pecwa_4037
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Entry
Pecwa_4037 CDS
T01106
Name
(GenBank) Pectate lyase/Amb allergen
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
pwa
Pectobacterium parmentieri WPP163
Pathway
pwa00040
Pentose and glucuronate interconversions
pwa01100
Metabolic pathways
pwa02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
pwa00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
Pecwa_4037
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Pecwa_4037
Enzymes [BR:
pwa01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
Pecwa_4037
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-ProteinID:
ACX89766
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Position
4443555..4444679
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AA seq
374 aa
AA seq
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MKYLLPSAAAGLLLLAAQPTMAANTGGYATTDGGNVAGAVNKTARSMQDIIDIIEAAKLD
AKGKKVKGGAYPLVITYNGNEDALIKAAENDICGQWSKDARGVEIKEFTKGITIIGTNGS
SANFGIWLTKSSDIVIRNMRFGYMPGGAQDGDAIRIDNTPNVWIDHNEIFAKNFECKGTK
DGDTTFESAIDIKKASTNVTVSYNYIHGIKKVGLSGFSSSDTGRDLTYHHNIYDDVNARL
PLQRGGQVHAYNNLYTNITSSGLNVRQKGIALIERNWFENAKNPVTSRYDGSNFGTWELR
NNNVMSPADFAKYNITWDKDTKPYVNAEDWKSTGTFASVPYSYSPVSAQCVKDKLANYAG
VNKNLAVLTAANCN
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atgaaatatctactgccttctgcagccgctgggctgttattgcttgcagcccaaccgacg
atggcggcaaatacgggaggttatgctaccactgacggcggtaacgttgccggtgccgtg
aacaaaacagcgcgttccatgcaagatatcattgatattatcgaagctgcgaagctggac
gccaaaggtaagaaggtcaaaggtggcgcttacccgctcgtcatcacctacaacggtaat
gaagatgcgctgatcaaagctgctgagaatgatatctgtggtcaatggagtaaagacgct
cgcggtgtggaaatcaaagagttcaccaaagggattactatcatcggaaccaatggttct
tccgccaacttcgggatctggctgacgaaatcatccgatattgtcatccgtaatatgcgt
tttggttacatgccgggcggtgcgcaggacggtgatgcaattcgtatcgataacacgcca
aacgtctggattgaccacaacgagatctttgccaagaactttgagtgtaaaggtacaaaa
gacggtgacaccacattcgaatccgcaattgatatcaagaaagcgtctaccaacgtgacc
gtgtcgtacaactacattcacggcatcaaaaaggtggggctgagcggcttcagcagcagc
gatacgggtcgtgatctgacttaccatcacaatatttacgacgatgttaacgctcgcctc
ccactgcaacgtggtggtcaggttcacgcttacaacaacctgtataccaacatcaccagc
tctggcctgaacgtgcgccagaaagggattgcgctgatcgaacgcaactggttcgaaaat
gcgaaaaacccggtgacctcacgctacgatggttccaacttcggtacttgggaattgcgt
aacaacaacgtcatgagcccagccgacttcgcgaaatacaacatcacctgggacaaagat
accaagccctacgtgaatgctgaagactggaaaagcaccggcacgttcgcttctgttcct
tatagctactccccagtttcagcacagtgcgtgaaggacaagctggcaaattatgctggc
gtgaacaaaaaccttgccgtactgacagcagcaaattgcaactag
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