Pectobacterium parmentieri WPP163: Pecwa_4166
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Entry
Pecwa_4166 CDS
T01106
Name
(GenBank) diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
pwa
Pectobacterium parmentieri WPP163
Pathway
pwa00300
Lysine biosynthesis
pwa00470
D-Amino acid metabolism
pwa01100
Metabolic pathways
pwa01110
Biosynthesis of secondary metabolites
pwa01120
Microbial metabolism in diverse environments
pwa01230
Biosynthesis of amino acids
Module
pwa_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
pwa00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
Pecwa_4166
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
Pecwa_4166
Enzymes [BR:
pwa01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
Pecwa_4166
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Gene cluster
GFIT
Motif
Pfam:
DAP_epimerase
PhzC-PhzF
Motif
Other DBs
NCBI-ProteinID:
ACX89890
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Position
complement(4590725..4591549)
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AA seq
274 aa
AA seq
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MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHCGVGFDQLLVVEPPYDPELDFHY
RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIAVSTQTGRMVLSVTDDELVRVNMGE
PNFEPQQVPFRAVKAEKTYIMRADEHTVLCGVVSMGNPHCVIQVDDVETAKVETLGPLLE
SHERFPERANIGFMQIVDSQTVRLRVYERGAGETQACGSGACAAVAVGILQGSLSAKVRV
SLPGGELDIQWDGPGHPLFMTGPATHVYDGFIHL
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgcagttcgctaagatgcacggattaggcaacgatttcatggttgttgatgccgttacg
caaaacgtttatttttcacccgaactgattcgtcgtttggcggatcggcactgtggtgtg
ggtttcgaccaactgttggtggtcgagccgccctacgatcctgaactggattttcattac
cgtatttttaacgcggatggtagtgaagtggcgcagtgcggtaatggcgcgcgctgtttt
gcccgctttgtgcgcctgaaagggctgaccaacaagcgtgatatcgccgtgagtacgcag
actggccggatggtgctgtctgtgacggacgatgaactggtgcgcgttaatatgggtgag
ccgaatttcgagccgcaacaggtgccttttcgcgcagtcaaagcggagaaaacttacatc
atgcgtgccgacgaacacacggtactttgtggcgtggtgtcgatgggcaacccgcactgt
gtgattcaggttgacgacgtggaaacggcgaaggtggaaacgctggggccgttgctggaa
agtcacgagcgctttcctgagcgtgccaacatcggttttatgcagatcgtcgatagccag
actgtccgtctgcgggtgtacgaacgcggtgcgggagaaacgcaggcgtgcggtagcggc
gcgtgcgctgctgtggcggtcggtatcctgcaggggtcattgtccgcgaaagttcgcgta
tcgctgccgggcggggagttggatattcagtgggatgggccgggacatccgttattcatg
accgggccagcaacgcatgtctacgatggatttattcatttatga
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