Pectobacterium parmentieri WPP163: Pecwa_4387
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Entry
Pecwa_4387 CDS
T01106
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pwa
Pectobacterium parmentieri WPP163
Pathway
pwa03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pwa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Pecwa_4387
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pwa03400
]
Pecwa_4387
Enzymes [BR:
pwa01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Pecwa_4387
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Pecwa_4387
DNA repair and recombination proteins [BR:
pwa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Pecwa_4387
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
ACX90079
LinkDB
All DBs
Position
complement(4810539..4811348)
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AA seq
269 aa
AA seq
DB search
MPELPEVETSRRGISPYLVGHTIFYAEVRNSRLRWPVSAEILSLSDEPVLSVRRRAKYLL
IELTGGWIIVHLGMSGSLRVLPEYTEPEKHDHVDLVMDSGKVLRYTDPRRFGAWLWTDNL
ETCSVLAHLGPEPLEAEFSSDYLYQASRNKKTAIKQWIMDNKVVVGVGNIYASESLFAAG
IHPDRAAGSLNESDATVLVRVIKQVLQLSIEQGGTTLRDFLQSDGKPGYFAQELRVYGRS
GEPCRTCGTPIETAKHGQRSTFFCRCCQK
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattacctgaggttgaaaccagtcgccggggaatttcaccctatctcgtcggc
cataccatcttttatgcagaagtgaggaattcgcgcctgcgctggccggtatcggctgaa
attctttcactaagcgatgagcctgtgctaagtgtgcgtcggcgggcaaaatacctgctg
attgagctcactggcggctggattatcgtgcatcttggtatgtctggcagcctgcgggtg
ttgccggaatataccgaacctgaaaagcacgatcatgttgatttggtgatggacagcggt
aaagtgctgcgttacaccgatccccgacgttttggtgcctggctgtggacggataatcta
gaaacctgctcggtattggcacatctggggccggagccattagaggcggaattctcctcg
gattatctctatcaggcttcacgaaataaaaaaacggcgatcaaacagtggattatggat
aacaaagtggtggttggcgtaggtaatatttacgcaagcgaatcgttgtttgctgctggt
atccaccctgacagagcggccggatcgttaaatgaaagcgatgcaacggtattggttcgc
gtgattaaacaggtgctacagctttcgattgagcagggtggcacgacgctgcgtgacttt
ttgcaatcagatggtaagcccggttatttcgcgcaggagctacgagtctatggccgcagc
ggcgaaccttgccggacatgtgggacaccaatagaaaccgcgaaacatgggcagcgtagc
acttttttttgtcgctgctgtcagaagtaa
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