Pseudomonas wadenswilerensis: LOY45_18070
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Entry
LOY45_18070 CDS
T11975
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pwd Pseudomonas wadenswilerensis
Brite
KEGG Orthology (KO) [BR:
pwd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pwd03032
]
LOY45_18070 (topA)
03400 DNA repair and recombination proteins [BR:
pwd03400
]
LOY45_18070 (topA)
Enzymes [BR:
pwd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LOY45_18070 (topA)
DNA replication proteins [BR:
pwd03032
]
Prokaryotic type
DNA Topoisomerases
LOY45_18070 (topA)
DNA repair and recombination proteins [BR:
pwd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LOY45_18070 (topA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
UVM20351
LinkDB
All DBs
Position
complement(3956214..3958826)
Genome browser
AA seq
870 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGSQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAAGE
APALSPKEKARKQLVARMGVDPDHGWKAKYEILPGKEKVIDELRRLAKDADTIYLATDLD
REGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQARRFLDR
VVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEVHADLGTAKDAK
VRFEVARENGEAFKPLNEAQAMAALAQLKSSSYTVAKREDRPTSSKPSAPFITSTLQQAA
SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSVDAVEMARSYIETEFGKKYLPEAPI
VYGSKEGAQEAHEAIRPSDVNTHPTKLSGMERDAERLYELIWRQFLACQMPPAQYLSTTV
SVTAGNFELRAKGRILKFDGYTRVLPQQSKPGDDDVLPEMNQGEVLKLIQIDPSQHFTKP
PARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKMGDIVTERLSES
FSNLMDYGFTAGMEENLDDVAQGERDWKNVLDEFYGDFSNKLKLAEDGEKGMRANQPTLT
NIACKECGRPMMIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESRVL
LNKHRCPICSTAMDAYLLDEKRKLHICGNNPDCTGYEIEEGNYRIKGYEGPSLECDKCGS
EMQLKTGRFGKFFGCTNAECKNTRKLLKSGEAAPPKMDAVKMPELKCEKVNDTYVLRDGA
SGLFLAASQFPKNRETRAPLVIEIIPHKDEIDPKYHFLCEAPKKDPDGRPAVIRYSRKTK
EQYVQTEVDGKPTGWRAFYDGNAWKVEDKR
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcattgtggaatccccggctaaggccaagaccatcaacaagtac
ctgggcagccagtacgtggtgaagtcgagtatcggccatatccgagacctgcccaccagc
ggttcggccagcgccagcaaggagcctgccgccaagcgcggcaaggccgccgcgggcgag
gcgccggccctgtcgccgaaagagaaggcgcgcaagcagctggtcgcgcgcatgggtgtc
gaccctgaccacggctggaaagccaagtacgagattctcccgggcaaggagaaggtcatc
gacgagctgcgtcgcctggccaaggatgccgacaccatctatctcgcaaccgacttggat
cgcgagggggaagccattgcctggcacctgcgcgaagccatcggtggtgacgacagccgc
tacaagcgcgtggtgttcaacgaaatcaccaagaaagctatccaggaagcgttctcgcag
cctggcgagctggatatcgaccgggtcaacgcccagcaggcacgacgcttcctcgatcgc
gtggtgggctacatggtctcgccactgctgtgggccaagatcgcccgtggcctgtccgcc
ggccgcgtgcagtcggtagcggtgaagctggtggtcgagcgtgagcgcgagatccgtgcc
ttcatccccgaggaatactgggaagtgcacgccgacctgggcactgccaaggacgccaag
gtgcgtttcgaggtggcccgcgagaacggcgaagccttcaagccgctgaatgaagcccag
gccatggcagcgctggcgcagctcaagtcgtccagctacaccgtggccaagcgtgaagac
cgcccgaccagcagcaagccgtcggcgccgttcatcacctcgaccctgcagcaggccgcg
agcaaccgcctgggcttcggcgtaaagaaaaccatgatgatggcccagcgtctgtacgaa
gccggctacatcacctacatgcgtaccgactcgaccaacctctcggtcgatgcggtagaa
atggcccgcagctacatcgaaaccgagttcggcaagaagtacctgcccgaagcgccgatc
gtctacggcagcaaagagggtgcccaggaagcacacgaagcgattcgtccatccgacgtc
aacacccatccgaccaagctcagcggcatggagcgcgatgccgagcgtctgtacgagctg
atctggcgtcaattcctggcctgccagatgccaccggcgcagtacctgtcgaccaccgtc
agcgtcaccgcaggcaacttcgagctgcgtgccaagggccgtatcctcaagttcgacggt
tacacccgcgtgctgccgcaacagagcaagccgggcgatgacgatgtgctgccggaaatg
aaccagggcgaagtgctcaagctgatccagatcgacccaagccagcatttcaccaagcca
ccagcgcgttactccgaagccagcctggtcaaggagatggaaaaacgcggtatcggtcgt
ccttcgacttatgctgcgatcatctcgaccattcaggatcgcggttatgtgaccctgcac
aaccgccgcttctactccgagaagatgggcgacatcgtcaccgagcgcctgtccgagagc
ttctccaacctgatggactacggcttcactgccggcatggaagagaacctcgatgacgtg
gcccagggcgaacgcgactggaaaaacgtgctggacgagttctatggcgacttcagcaac
aagctgaagctggccgaagacggcgagaagggcatgcgtgccaaccagccgaccctgacc
aacattgcctgcaaggaatgtggccggccgatgatgatccgcaccgcctccaccggcgtg
ttccttggctgttcgggctacagcctgccgcccaaagagcgctgcaaggccaccgtcaac
ctggtcccgggcgatgaaatcgcggccgacgacgagggtgaatcggaatcgcgggtgctg
ctcaacaagcaccgttgcccgatctgctcgacagccatggatgcttacctgctcgacgag
aagcgcaagctgcacatctgcggtaacaacccggactgcaccggctatgaaatcgaagag
ggcaactaccgcatcaagggctatgaagggccgagcctggaatgcgacaagtgcggtagc
gagatgcagctcaagaccggccgtttcggcaagttcttcggttgcaccaacgccgagtgc
aagaacacccgcaagctgctcaagagcggcgaggcggcgccgccgaagatggatgcggtg
aagatgccggagctcaagtgcgagaaagtcaacgacacctacgtgttgcgtgacggcgct
tcggggttgttcctggctgccagtcagttcccgaaaaaccgcgagacccgcgcaccgctg
gtgatcgagatcatcccgcacaaggacgagatcgatccgaagtaccacttcctctgcgaa
gcgccgaagaaagacccggacggtcgcccggcggtgatccgctacagccgcaagaccaag
gagcagtacgtgcagaccgaggttgatggcaagccgactggctggcgtgcgttctacgac
ggcaatgcctggaaggtcgaagacaagcgctga
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