KEGG   Pseudomonas wadenswilerensis: LOY45_24545
Entry
LOY45_24545       CDS       T11975                                 
Name
(GenBank) RNA polymerase sigma factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
pwd  Pseudomonas wadenswilerensis
Pathway
pwd02020  Two-component system
Brite
KEGG Orthology (KO) [BR:pwd00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    LOY45_24545
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pwd03021]
    LOY45_24545
Transcription machinery [BR:pwd03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     LOY45_24545
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 HTH_23 Sigma70_ECF Rv2175c_wHTH HTH_17 Sigma70_r3 HTH_24 MerR HTH_31 PhyR_sigma-like HTH_29 HTH_IclR FaeA HTH_11 HTH_3 Phage_terminase TnsD
Other DBs
NCBI-ProteinID: UVM21546
LinkDB
Position
5344365..5344883
AA seq 172 aa
MSSVQSPHTELVGTLYRDHRSWLLAWLRRNIACAERAEDLSQDTFVRLLGREQLPAPREP
RAFLLAIARGLLFDHFRRAALEQAYLAELMLIPEAEQPSPEEQHLILEDLKAIDRLLGKL
SSKARAAFLYNRLDGLGHAEIAERLGVSVSRVRQYLAQGMRQCYVALYGEPT
NT seq 519 nt   +upstreamnt  +downstreamnt
ttgtcgtctgtgcaaagcccacacactgagctggtcggtacgctgtaccgtgaccatcgc
agttggctgctcgcctggctgcgacgcaatatcgcctgcgccgagcgcgccgaagacctg
agccaggacaccttcgtgcgcctgctcgggcgcgagcaattgcctgcgccacgcgaaccc
cgggcgttcctgctggccattgccaggggcctgctgttcgaccactttcgccgcgccgca
ctggagcaggcgtatctggccgagctgatgctgatccccgaagccgagcagccctccccc
gaagaacaacacttgatcctcgaagacctcaaggccatcgaccgcctgcttggcaagctg
tcgagcaaggcccgggcagcattcctgtataaccgcctggacggcctgggccatgccgag
atcgccgaacgcctgggcgtttccgtatcgcgggtgcgccagtacctggcccagggcatg
cgccagtgctacgtggcgctgtacggtgaaccgacatga

DBGET integrated database retrieval system