Pseudomonas wadenswilerensis: LOY45_25765
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Entry
LOY45_25765 CDS
T11975
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pwd Pseudomonas wadenswilerensis
Pathway
pwd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pwd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOY45_25765 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pwd03021
]
LOY45_25765 (rho)
03019 Messenger RNA biogenesis [BR:
pwd03019
]
LOY45_25765 (rho)
Transcription machinery [BR:
pwd03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
LOY45_25765 (rho)
Messenger RNA biogenesis [BR:
pwd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LOY45_25765 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
NACHT
Motif
Other DBs
NCBI-ProteinID:
UVM21780
LinkDB
All DBs
Position
complement(5612579..5613838)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKQKPITDLLEMAEQMGIENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQD
GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN
FDRPENAKNKILFENLTPLFPNERLKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIAANITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRKIAEKRVFPAINI
NRSGTRREELLTADDELQRMWILRKLLHPMDEVAAIEFLIDKLKQTKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaacctgactgaactcaagcaaaagccgattaccgatctgctcgaaatggccgaacag
atgggcatagaaaatatggcccgttcgcgcaagcaagatgtgattttctccctgttgaaa
aagcatgcgaaaagcggcgaggaaatctccggtgacggcgtgctggagattctccaggac
ggcttcggcttcctgcgctcggccgatgcctcgtacctggccggcccggacgacatctac
gtgtcgccaagccagatccgccgtttcaacttgcgtaccggcgacaccatcgtcggcaag
atccgcccgccaaaagaaggcgagcgttacttcgccctgctgaaagtcgacaccatcaac
ttcgaccggccggaaaacgcgaagaacaagatcctgttcgagaacctgacgccgctgttc
cccaacgagcgcctgaagatggaagccggcaacggttccaccgaagacctcaccggccgg
gttatcgacctctgcgccccgatcggcaaaggccagcgcggcctgatcgtcgctccgcca
aaagcgggcaagaccatcatgctgcagaacatcgcggccaacatcacccgtaacaatccc
gagtgccacctgatcgtcctgctgatcgacgagcgcccggaagaagtgaccgaaatgcag
cgcaccgtgcgcggcgaagtggttgcctcgactttcgacgagccgccaacccgccacgtg
caggttgccgaaatggtcatcgagaaggccaagcgcctggttgaacacaagaaagacgtg
gtcatcctgctcgactccatcacccgtctggcccgtgcctacaacaccgtgatcccgagc
tccggcaaggtcctcaccggtggtgtcgatgcccacgccctggagaagccgaagcgtttc
ttcggtgccgcgcgtaacatcgaagaaggcggttcgctgaccatcatcgccaccgcgctg
gtcgaaaccggctcgaagatggacgaagtgatctacgaggagttcaagggtaccggcaac
atggagctgcccctggaccgcaagatcgccgagaagcgtgtcttcccggccatcaacatc
aaccgttcgggtacccgtcgcgaagagctgctgaccgccgacgacgagctgcagcgcatg
tggatcctgcgcaagctgctgcacccgatggatgaagttgctgctatcgagttcctgatc
gacaaactcaagcagaccaagaccaacgacgagttcttcttgtcgatgaagcgcaagtaa
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