Pseudoxanthomonas winnipegensis: MWN52_07155
Help
Entry
MWN52_07155 CDS
T09190
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pwi
Pseudoxanthomonas winnipegensis
Pathway
pwi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pwi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MWN52_07155 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pwi03019
]
MWN52_07155 (rnr)
03016 Transfer RNA biogenesis [BR:
pwi03016
]
MWN52_07155 (rnr)
Enzymes [BR:
pwi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MWN52_07155 (rnr)
Messenger RNA biogenesis [BR:
pwi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MWN52_07155 (rnr)
Transfer RNA biogenesis [BR:
pwi03016
]
Prokaryotic type
tRNA degradation factors
MWN52_07155 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
WHD_RNase_R
Rho_RNA_bind
HTH_20
DUF150_C
Motif
Other DBs
NCBI-ProteinID:
WJI17029
LinkDB
All DBs
Position
1602240..1604663
Genome browser
AA seq
807 aa
AA seq
DB search
MPQLPDAPAPARPGKSAPGGRRGGDDRPRDAGPRPFERRPRGPRVVVPAQGAGHAGFVDP
HAAREAERYAQPIASREVILGTLAASEGPLTAEEVAAKLDLTAPDRFEALSKRLNAMVRD
GQLLLNRRGGYAPAEQMDLVPGVVIANPEGFGFLRPEAGGDDLFLPPFEMRKVMHGDRVL
ASVTGMDRRGRREGAIVEVLERRVHRLIGRFAIEAGVSFVVPDDKRMQRNVMIPPDARGE
ARDGQLVVCELTHAPDGRREPIGKIIAVLGDKLTPSLVVETAIHGHELPYEFPQAVLDEA
AAVPLKVEPSMIGGRVDLRDMPLVTIDGADAKDFDDAVYCESNRKGLRISNRSGYRLVVA
IADVSHYVRPGTPLDEEAQLRATSVYFPGFVVPMLPETLSNGICSLNPNVDRMCFVCDMQ
VNKNGEVTESKFYEAVMRSHARLTYDQVWKAVGEDDAEAQAQIGPAILPHVQRLHALYGL
LAKARQKRGAIEFETSEVRFVLDNKGEVTQAGMQVRNDAHKLIEECMIAANVQAARYLLA
KGVPAPYRVHERPPESKYADLLEFLKEFKLSMPPWSKVEPRDFTALLHKIRQRPDVALLE
SVVLRSQSLAVYTPDNAGHFGLALDAYAHFTSPIRRYPDLLVHRAIKHALSGKPVEKFQY
SPREMAALSLQCSERARRADEAEREVDERYRAAWMEQHVGGIFDGVISGVTSFGLFVELN
QSKVNGLVHVTQLPHDYYHFDPIRKTLSGERRGMEFRLGDAVQVQVMKASMEERKIDFRL
VEQRQDGAAADEQPPQAFPAKRKKQKY
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atgccgcaactgcccgacgcacccgccccggcgcgccccggcaagagtgcgcccggcggg
cgccgcggcggcgatgaccgaccccgcgacgcggggccgcgtccgttcgaacgccgcccg
cgcggtccgcgcgtggtggtgcccgcgcagggcgcgggccacgccggcttcgtcgacccc
catgccgcccgcgaggccgagcgctacgcccagcccatcgccagccgcgaagtgatcctg
ggcacgctggccgccagcgaaggtccgctcaccgccgaggaagtggcggccaagctcgac
ctgaccgcgccggaccgcttcgaggcattgagcaagcgcctcaatgcgatggtccgcgac
ggccagctgctgctcaaccgccgcggcggctatgcgccggccgagcagatggacctggtg
ccgggcgtggtgatcgccaacccggagggcttcggcttcctgcggcccgaggcgggcggc
gacgacctgttcctgcccccgttcgagatgcgcaaggtcatgcacggcgaccgcgtgctg
gccagcgtcaccggcatggaccggcgcggccgccgcgagggcgcgatcgtggaagtgctc
gagcgccgcgtgcaccggctgatcggccgcttcgcgatcgaggcgggcgtgagcttcgtg
gtgcccgacgacaagcgcatgcagcgcaacgtcatgatcccgcccgacgcgcgcggcgag
gcgcgcgacggccagctggtcgtgtgcgagctgacccatgcgccggacgggcgccgcgag
ccgatcggcaagatcatcgccgtgctcggcgacaagctcaccccctcgctggtggtggag
accgccatccacggtcacgagctgccctacgagttcccgcaggccgtgctggacgaggcc
gccgcggtgccgctgaaggtcgagccgtcgatgatcggcgggcgcgtggacctgcgcgac
atgccgctggtgaccatcgacggcgccgacgccaaggacttcgacgacgcggtgtattgc
gagtccaaccgcaagggcctgcgcatcagcaaccgctccggctaccggctggtggtggcc
atcgccgacgtgtcgcattacgtgcgcccgggcaccccgctggacgaggaggcgcagctg
cgcgcgacctcggtgtacttccccggcttcgtggtgccgatgctgccggagaccctgtcc
aacggcatctgctcgctcaatcccaacgtggaccgcatgtgcttcgtgtgcgacatgcag
gtcaacaagaacggcgaggtcaccgagtcgaagttctacgaggcggtgatgcgctcgcat
gcgcgcctgacctacgaccaggtgtggaaggcggtgggcgaggacgacgccgaggcgcag
gcccagatcggcccggccatcctgccgcacgtgcagcgcctgcacgcgctgtatggcctg
ctggccaaggcgcggcagaagcgcggcgcgatcgagttcgagaccagcgaagtgcgcttc
gtcctggacaacaagggcgaggtcacccaggccggcatgcaggtgcgcaacgacgcgcac
aagctgatcgaggaatgcatgatcgcggccaacgtgcaggccgcgcgctatctgctggcc
aagggtgtgccggcgccataccgcgtgcacgagcgtccgccggagtccaaatacgccgac
ctgctggagttcctcaaggaattcaagctgtccatgccgccgtggagcaaggtcgagccg
cgcgatttcaccgcgctgctgcacaagatccgccaacgcccggacgtggccctgctggag
tcggtggtgctgcgcagccagagcctggcggtgtatacgccggacaacgccggccacttc
ggcctggcgctggacgcctatgcgcacttcacctcgccgatccgccgctacccggacctg
ctggtccaccgcgcgatcaagcacgccctcagcggcaagccggtggagaagttccagtac
agcccgcgcgaaatggccgcgttgtcgctgcagtgctccgagcgtgcgcgccgtgccgac
gaggccgagcgcgaggtcgacgagcgctaccgcgccgcgtggatggagcagcatgtcggc
ggcatcttcgacggggtgatcagcggggtgaccagcttcgggctgttcgtcgagctcaac
cagtccaaggtcaacggcctggtccacgtaacccagctgccgcacgactattaccacttc
gacccgatccgcaagacgctctccggcgagcgccgcggcatggagttccgcctgggcgac
gcggtccaggtgcaggtcatgaaggccagcatggaggagcgcaagatcgacttccggctg
gtggagcagcgccaggacggggccgccgcggacgagcagccgccgcaggcgttcccggcc
aagcgcaagaagcagaagtactga
DBGET
integrated database retrieval system
