Pseudoxanthomonas winnipegensis: MWN52_12790
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Entry
MWN52_12790 CDS
T09190
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
pwi
Pseudoxanthomonas winnipegensis
Pathway
pwi02020
Two-component system
pwi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pwi00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
MWN52_12790
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
MWN52_12790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pwi03021
]
MWN52_12790
Transcription machinery [BR:
pwi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
MWN52_12790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_AsnC-type
HTH_IclR
HTH_23
HTH_Tnp_ISL3
HTH_38
HTH_Crp_2
Motif
Other DBs
NCBI-ProteinID:
WJI14508
LinkDB
All DBs
Position
2893016..2894458
Genome browser
AA seq
480 aa
AA seq
DB search
MKPRLQTSLGQQLVMTPQLRQAIRLLQMSAAELEAEITEAVETNPLLDWAEDGPDAQAGG
VDHADHAPADEPPEERQPEREDWQADENPWSNEGGGGSGGSFDDDDNPGSAAERVAQTDS
LQDHLLWQLHLSQLSLRDRRIGAAVIDAIDDDGYLRTELAEIAQTLRPEVVAGEDEIQAV
LCQLQRFDPVGVGARSLGECLCLQLDVLSADTPGRALALTIAQGALLEKLPRSGVAGLAS
ELKRPQAEVEDAVALLRSLDPKPGVQIGELSQDTYVVPDCVVWRQKGIWRAALASQHLPR
VSIHRGYESMIRQCSESDAGYLRGHLQEARWLLKSLEARGDTLLKVTRCLIHQQAGFLEF
GEAALRPLTLREVAGEVGLHESTVSRAIARKYVRTPRGTLPLRAFFASGVSTEGGGEASS
TAIQSMIRKLIESENPRKPLSDAKLADLLKSSGVPVARRTVAKYREAMDILSSHERVRMG
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgaagccacgcctccagacatcgctgggccagcaactggtcatgacgccgcagctgcgt
caggcgatccgtctgttgcagatgtccgcggccgaactggaggccgagatcaccgaggcg
gtggagaccaaccccctgctggactgggccgaggacggccccgatgcccaggccggcggc
gtcgatcacgccgaccacgccccggccgacgagccgcccgaagagcgccagcccgagcgc
gaggactggcaggccgacgagaatccctggagcaatgagggcggcggcgggtccggcggc
tcgttcgacgacgacgacaaccccggcagcgcggccgagcgcgtggcccagaccgacagc
ctgcaggaccatctgctgtggcagctgcatctgtcgcagctgtccctgcgcgaccggcgc
atcggcgcggcagtgatcgacgccatcgatgacgacggctatctgcgcacagagctggcc
gagatcgcccagaccctgcggccggaggtcgtcgccggcgaggacgagatccaggccgtg
ctgtgccagctgcagcgcttcgatccggtcggggtcggcgcgcgctcgctgggcgagtgc
ctgtgcctgcagcttgacgtgctctcggccgacacgcccggccgcgcgctggcgctgacc
atcgcccagggcgccctgctggagaagctgccgcgcagcggcgtggccggcctggccagc
gagctcaagcgcccccaggccgaggtcgaggacgccgtggcgctgctgcgctcgctggat
cccaagccgggggtgcagatcggcgaactcagccaggacacctatgtggtgcccgactgc
gtggtctggcgccagaagggcatctggcgcgcggccctggccagccagcatctgccgcgg
gtgtccatccatcgcggctacgagtcgatgatccgccagtgcagcgagtcggatgccggc
tacctgcgcggccacctgcaggaggcgcgctggctgctcaagagcctggaggcccgcggc
gacaccctgctcaaggtcacccgctgcctgatccaccagcaggccggcttcctggaattc
ggcgaggccgccctgcgcccactgaccctgcgcgaggtcgccggcgaggtcggcctgcac
gagtccaccgtctcgcgcgccatcgcccgcaagtacgtacgcaccccgcgcggcaccctg
cccctgcgcgcgttcttcgcctctggggtgagcaccgagggcggcggggaggcctccagc
accgccatccagtcgatgatccgcaagctgatcgagtccgaaaacccgcgcaagccgctg
tccgacgccaagctggccgacctgttgaaatcgtcaggcgtgccggtggccaggcgcacg
gtggccaagtatcgtgaggccatggacatcctgtcctcccacgagcgcgtgcggatgggc
tga
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