Pleurodeles waltl (Iberian ribbed newt): 138246065
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Entry
138246065 CDS
T10800
Symbol
TNRC6C
Name
(RefSeq) trinucleotide repeat-containing gene 6C protein isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Brite
Messenger RNA biogenesis [BR:
pwl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
138246065 (TNRC6C)
Chromosome and associated proteins [BR:
pwl03036
]
Eukaryotic type
Gene silencing
piRNA pathway
138246065 (TNRC6C)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
Ago_hook
UBA_7
UBA
RRM_1
RRM_occluded
MTH865
DUF4718
UBA_NBR1_C
THOC7
Motif
Other DBs
NCBI-GeneID:
138246065
NCBI-ProteinID:
XP_069056350
LinkDB
All DBs
Position
7:complement(1160730519..1161431407)
Genome browser
AA seq
1950 aa
AA seq
DB search
MEEKKKKKQEEKKKKEGAQKKAAEQKTKVPETTKTSSSQPQPAGTSTSTSTSTITSSSNG
KRSCANSQQPAASRYLPREVPPRFRQQEQKQLLKRGQPLPTGTLTCAGPAQSTSQAGGSP
PPLQGVGLLHHPSKAQIDLGHSGLGDHYDSSQWSQQSTFRGEANCSWDKVIIDRTDKEAW
PSITGTETAPASECTTDTKAASNCGSENSSMATGSAQGNFTGHTKKTNGNNGINGALVQS
TSNQNALGACGANGNGNSARGWGVAPGSNPGLSHCSASNGDGKMDSMIGDGRSQNCWGAS
TSNAGINLNLNPNANPAAWPVLGHDGTVGGANPPSIGSPVSAIGPTMGNHQNGNPGGSMS
AWGSLLTQESTEPQTSTSQNVSFSVQPQNLNTDGPNSTSPMSSSPNPINAMQANGLPNWG
MAVGMGSIIQPHIKGLSGANGSSVSQVSGGSDDGMSGSMWGLSQGNSAPVCSSSGFSQGN
GDTVNSALSAKHNGSSNGVQKEGNGSSVWDSGLSAGPGTLAWGRGGGNVAGMQPAAWNNS
ARNPTSGVNGEWVKPPNHHSNSDISGKGSTGWDNPSINCQHPANDQRNTWAKAAATGTTT
SDGSNGSAVNQNEGNNGPGGASEGRRGENGITDQGQIQLPRQDLDPRVLSNTGWGQTPVK
QNIAWDFNEAARAERKSDAGTDAWSGASPQPSNSGGKSEGSIVNSTNTSSVSGWVGSPPA
ASVPANTGWGENKLSNGQGGWGDSASSTSVNAAAKSVHAWSASANQEDKSPAWGEPPKPK
SQNWCDGQKSSPGWTSGGGGDWAESSAHSGHIGDGKKNSPGWDNDSRSGPGWNDTTVRSG
TSGWGNSTNTKANPGTSWGESLKPLPQQNWASKPQDNNVSGWGGASSVKQTGSGWVGGPG
PVPSVPVQVPASVTVPLSAKHKESNCEATGWEEPSPPSMRRKMEIDDGTSAWGDPHNYNK
KTVNLWDRNKPASQNGTATATTTTTANTNMVEPQPAHQSSAHRNRSPLLGPGWGDMPSVH
TKTDTSWGEPSSPSAAVDNGTSAWGKPPSNASGWGDGSAESAGTYGRASAGPALCKPASK
SMQEGWGSGGDDVNISSSQWEEEDGEMWNNTASQECNQPCSSWGNAPKKALPKGMKTTCK
PDEAWIMNRLIKQLTDMGFPRDPAEEALKSNNMNLDQAMSALLEKKVELDKRAMGITDYN
GMVNKALACRPPPISKESSMDRPNFLDKLTLSFSNQDGGLTEEPTSSPFLPSPSLKLPHS
NSALPNQALGGIATGLGMQNLNSSRQIPSGNLGMFGNSGAAQGRSMQPSQQPPAQPLNPS
QPNLRAQVPQFLSPQVQAQLLQFAAKNIGLNPALLTSPINPQHMTMLNQLYQLQLAYQRL
QIQQQMLQAQRNVSGPMRQQEQQVARTINNMQQQIQQHQRQLAQALLMKQQPPPTHPSMH
PFVGKSATDFSPHTQAHSLSDLQTKEQQSSQNTYTSYPIVAGMNPNMNVANVDVNGGLAV
KDSSQSQSRLPQWTHPNSIENLSNCVSPHDQNAGKHGAIPGGLTIGPPLKSSIDDSYGRY
DLIHNSDSPASPPVAVPDSWSRAKSDAEKISNGSSINWPPDWLLSSQTEFHPGVPWKGLQ
HIDPENDPDVTPGSVPTGPTINTTIQDVNRYLLKSGGSSPTTSQNASLQPSSAWPPSASS
YASSISNFAATHSVAGKLSDMKSTWSPGPISHTQASLSQELWKIPRNTNAPTRPPPGLSH
AKPSSTWGANQLGWTSSYSSGSAWSTDTSGRSSSWLVLRNLTPQIDGSTLRTLCLQHGPL
ITFHLNLTQGNAVVRYSSKEEAAKAQKSLHMCVLGNTTILAEFAGDEEVNRFLAQGQPLP
PTSNWQPNTGNNQGRMGPVTGSHSMVRNDTGHWNTPCLGGKGSNDLLWGGVPQYSSSLWG
PPSSEDGRVIRSPTPMNTLLPGDLLSGESM
NT seq
5853 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaagaaaaagaaaaagcaggaagaaaagaaaaagaaagaaggtgctcaaaaa
aaggctgccgaacaaaaaaccaaagtgccagaaactactaagaccagttcaagccagccc
caacctgccggtaccagtaccagcacttccaccagcactattaccagcagcagcaatggc
aagcgttcatgtgctaacagccaacagccagccgcatcccgttacctgccccgtgaggtg
cctccacgtttccgccagcaagaacagaaacaactgttaaagagaggacagccactgccg
acagggaccttgacttgtgcaggcccagcacaaagtactagccaagctgggggaagtccc
cctcctctgcagggggtaggcttgctgcaccatccaagcaaggcacaaatagatcttggg
cacagtgggcttggagaccactatgacagttcccaatggagtcagcagtccactttccga
ggtgaagccaattgcagctgggataaagtgataatagaccggaccgataaggaggcgtgg
ccttccattacaggaactgagactgcacctgcttcggaatgtactacagacactaaagct
gcctctaactgtgggtccgagaatagtagcatggctacagggagtgcccaaggcaacttc
accggacatacaaagaaaaccaatggcaataatggcatcaatggagcactcgtccaaagc
acttctaaccagaatgcccttggagcatgtggagcgaatggcaatggaaactcagccagg
ggctggggcgtggccccaggctcaaaccctggactttcccactgctctgccagtaacgga
gatggaaagatggacagcatgattggggatggtagaagtcaaaactgctggggtgcttcc
acctccaatgctggcattaatcttaaccttaaccctaatgccaacccagctgcctggcct
gtgcttggacatgatggaactgtgggaggagccaatcctcccagtattggcagtccagtc
agtgccataggcccgaccatggggaaccaccaaaatgggaacccaggtggcagtatgagt
gcgtggggaagtttgctgactcaagagagcacagaaccacaaacgtccacttctcagaat
gtgtctttcagcgtacaacctcagaaccttaacactgatggaccaaatagcactagcccc
atgagctcttcaccaaaccctattaatgcaatgcaggcaaatggactgcccaactggggg
atggctgttggtatggggtccatcatccagccccacataaaaggcctttctggtgctaat
ggatcatcagtttctcaagtgagtgggggcagtgatgatggaatgagtggttcgatgtgg
gggttgtcccaaggtaattctgccccagtatgcagcagttctgggttcagtcaggggaat
ggagacactgtgaactctgcactaagtgctaaacataatggatccagcaatggtgtacag
aaagagggaaatggtagcagtgtatgggattctgggctatctgctggtcctggaacactt
gcctggggaaggggaggaggtaatgttgcaggtatgcaacctgcagcatggaataattct
gctcgtaaccccaccagtggcgtgaatggtgaatgggtcaaacccccaaaccatcattcc
aacagtgacatcagtgggaaagggtcgacagggtgggataacccaagtattaactgtcag
catcctgccaatgatcaaaggaacacttgggccaaagcagcggccaccggcaccacaact
agcgatgggagcaatggtagtgctgtaaatcaaaatgaaggaaacaatggacctggagga
gcaagtgaggggagaaggggggagaacgggataactgaccaaggacaaatccagttgccg
cgacaggaccttgatccaagagtcctgtctaatactggatggggtcagactcctgttaag
cagaacattgcctgggacttcaatgaagcagcacgggctgagcgaaagagtgatgctggg
acagatgcttggagtggtgcatctcctcagccttcaaactcaggggggaagagtgaaggg
tccatcgtgaacagtacaaatacctcttcagtatctgggtgggtcggctccccacctgct
gcttctgttccagcaaacacaggctggggagaaaacaaactgtctaatggccaagggggt
tggggtgattctgctagctctacttctgttaatgctgctgccaaaagcgtccacgcttgg
agtgcgtctgcaaatcaagaggacaagtcacctgcctggggtgagcctcctaagcccaaa
tctcaaaattggtgtgacgggcagaaatcaagcccaggctggacttcaggaggtggagga
gactgggcagaatcttcagcccactcaggacacattggagatggaaagaagaatagtcct
gggtgggataatgacagcaggtctggacctggttggaacgatactacagtaaggtctgga
accagtgggtgggggaacagcacaaacacaaaggctaatccgggtactagttggggagaa
tcattaaaacctcttcctcagcagaattgggccagtaagccacaggacaacaatgtgagt
ggctggggaggagcttcatctgttaaacagaccgggtccggatgggtgggtggaccaggt
ccagtaccatctgtgcctgtccaagtgccagcatcagtaactgtacctctttcagccaaa
cataaggaaagcaactgtgaggccactggttgggaggagccgtcaccaccctccatgcga
cgcaagatggaaattgacgatggtacttctgcctggggtgatcctcataactacaataag
aaaactgttaatttgtgggatagaaacaaacctgctagtcagaacggcactgcaactgcc
accactaccaccactgcgaacacaaatatggttgagccacagccagctcaccagtcaagt
gcccatagaaaccggtccccacttcttggtccaggctggggagatatgccttcagttcat
acaaagactgacacctcttggggagaaccctcctccccctctgctgcagtagataacggc
acatcggcgtgggggaagccgcccagcaatgcttcagggtggggagatggctctgcggag
tcggcagggacatacggaagagcaagcgctggcccagcactgtgcaaaccagcttcaaaa
tctatgcaagaaggctggggcagtggtggggacgacgtgaacatcagttccagtcagtgg
gaagaagaggacggagaaatgtggaataacactgcttcccaggagtgcaaccagccctgc
agttcatggggtaacgctccgaagaaagcacttcccaagggcatgaagacaacatgcaag
ccagatgaggcgtggatcatgaatcgtcttatcaagcagctgacagacatgggcttccca
agagatccagcagaggaggcattgaagagcaacaatatgaacttggaccaggccatgagt
gctctgctggaaaagaaggtggaactagacaagcgtgcaatgggaataactgactataat
gggatggtcaacaaagcccttgcctgccgcccgccacccatctccaaagagtcttccatg
gaccgccccaacttccttgacaagctcacactttcattctccaatcaggacggcggccta
acggaagagcccacttcttcaccatttttgccttcaccaagcctgaagctcccccattca
aacagtgcactcccaaatcaggccctgggcgggattgctacagggctgggcatgcaaaac
ttgaattcttctcgacagataccgagtggcaatctgggtatgtttggcaatagtggagca
gcacaaggcaggtcaatgcaaccatcccagcaaccgccagctcaacctctgaacccatcc
cagcctaatcttcgtgctcaagtgcctcagtttctatcccctcaggttcaagcacagctt
ttgcagtttgcagcaaaaaacattggtctcaaccctgcactattaacctcgccaattaat
cctcagcatatgacgatgttgaaccagctctatcaactgcagctggcttaccaacgttta
caaatccagcagcagatgttacaggctcagcgtaatgtttccggacccatgagacaacag
gaacagcaagttgcacgtacaatcaataacatgcagcaacagattcagcagcaccagcgt
cagctggcccaggccctgctgatgaagcagcagccgccccctactcatccttccatgcac
ccctttgtgggaaaatcagccacagatttctctcctcacacccaggcgcacagcctctct
gacctgcagaccaaagagcagcagtcttcacaaaatacctacacttcctatcccattgtg
gctggaatgaacccaaacatgaatgtagccaacgtggatgtcaatggtggtttagcagtg
aaagacagttctcagtcgcagtcacgccttcctcagtggacacatcccaactcaattgaa
aatctgtccaactgtgtttctccccatgaccagaatgcaggcaagcatggtgctatccct
ggaggcctcaccattggccctcccttaaagtcctccattgatgactcttatggccgctac
gacctgatccacaacagtgactctccagctagccccccagtagctgttcctgatagctgg
tctcgtgccaagtctgatgctgagaaaatctcaaatggctccagcatcaattggcctcca
gactggctcttgtcttcacaaacagagtttcacccgggcgtgccatggaaaggactgcaa
catattgaccctgaaaatgaccctgacgtcactcccggaagtgtcccaacagggcccacc
atcaataccaccatccaggatgtcaatcgctatcttctgaaaagtggagggtcatcccca
acaacatcccagaatgcttcgctgcagccttcgagtgcctggccacccagtgcctccagc
tatgctagctctatcagcaactttgctgccacacatagtgttgcaggaaaactgtcggac
atgaagtcaacatggtctccgggccctatttcacacacacaagcctcattatcccaagaa
ctctggaaaattcccagaaacactaatgctccaacaagacccccaccgggcctgtcacat
gccaagccgtcatccacctggggtgccaaccaactgggctggaccagttcgtattcctct
ggttctgcttggagcacggacacttcaggaagaagcagcagctggcttgtcttgcgcaac
ctcacaccccagattgacggttccactttgcgcaccctctgtctgcaacacggcccgctc
attacattccacttgaacctcacgcagggcaatgctgtagtccgttacagttccaaggag
gaagctgccaaggcacagaagtctcttcacatgtgtgtcctaggaaacactaccatcctt
gctgagtttgctggtgatgaagaagtcaatcgtttcttagcacaaggtcagccactacca
ccaacttcaaactggcagccgaacactggaaacaaccaaggtcgcatgggtcctgtcacc
ggctcacactccatggtgcgcaatgatacaggccactggaacaccccctgtctgggtggt
aaagggagtaatgacctcctatggggaggggtcccccagtactctagcagcctttggggt
cctcccagtagtgaagatggcagggtgataagaagcccgacacctatgaacacccttctt
ccaggtgatctcctcagtggtgaatcgatgtaa
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integrated database retrieval system
