Pleurodeles waltl (Iberian ribbed newt): 138246170
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Entry
138246170 CDS
T10800
Symbol
TRIM28
Name
(RefSeq) transcription intermediary factor 1-beta
KO
K08882
tripartite motif-containing protein 28 [EC:
2.3.2.27
]
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
pwl01001
]
138246170 (TRIM28)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pwl04121
]
138246170 (TRIM28)
Enzymes [BR:
pwl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
138246170 (TRIM28)
Protein kinases [BR:
pwl01001
]
Serine/threonine kinases: Other
TIF1 family [OT]
138246170 (TRIM28)
Ubiquitin system [BR:
pwl04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
138246170 (TRIM28)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-B_box
ANCHR-like_BBOX
zf-C3HC4
PHD
zf-RING_UBOX
zf-C3HC4_3
zf-RING_5
zf-C3HC4_2
zf-RING_2
YaaC
Bromodomain
Motif
Other DBs
NCBI-GeneID:
138246170
NCBI-ProteinID:
XP_069056594
LinkDB
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Position
7:1278235386..1278609266
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AA seq
808 aa
AA seq
DB search
MAQTAAAGSPRERRSEVPDLQFLENCGVCKGRPQQPRLLPCLHSVCTGCLGPEISKEGSA
VTLCPVCKHQCLQKDIVENYFLKETTSATGSDHQKEVTQRCTSCEDNAVATSYCIECTEW
LCGTCVEAHQRVKFTKDHTVRTIGGSKSKEGAHTVFCSVHKQEPLMLFCDTCDTLTCRDC
QLQSHKDHQYQFLDDAVRNQRKILAALVKRLGEKHTNLQKSTKDVRASIRQVTDIQKKVQ
VDVKMAILQIMKELNKRGKLLVNDVQRVTEGQQEKLERQHWNMTKLQRHQEHILRFASWA
LESDNNTALLLSKKLIYFQLHRALKMIVDPVEPLGDIKFQWDSDVWTKHAEGFGKIVSEK
GGILQATNSSMPAPQSMSSSHRAQNMNSAMGAARSNSNQVLAPLTNVYPLPQNRPRAPTP
QSQTSGRLTVGATGGFMQPMQSLDGTEGFLEGAPSSYEGTVSGIKRGRTSDGDVTMLKKV
PRVSLERLDVDLTPDTQPPVFKVYPGHSNEDYNLIVIERGNPSSEAVIKEEVMETGIEPP
SEQTCELNIPGHVSPVESLTRVTSSPAVGPVQDVAAPEIQPFQTVVEATENSNLKCNVCQ
TSGVLLTCKQCQMHYHAECHIPVIQEHPSGEWKCLLCQDLPGDENQPHGDGTVTDQPVAK
MSQSNQKKCERLLLELLCYELCRPLQRLSTSLEKDDPINLTTIRCRLQESLSPIYASPEE
FVREVCVMFKKVSKHAEDKEVVQSLIGLQSFFETKLSSLFADPKILSVMGDVMSEDQQSE
SSGLTHQSSPVSTTSDVVSVPKPPGDDE
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atggcacagacagcagcggcagggtcccctagggagcggcgctccgaggtccccgacctg
cagtttctggagaactgcggtgtgtgcaagggccgcccgcagcagccgcgcctgctgccc
tgcttgcattcagtgtgcacgggatgcttgggacccgagatatccaaggagggatcagct
gttacactctgccctgtatgcaaacatcagtgtttacagaaagacatagtggaaaattac
ttcttaaaggagaccacttcagcaactgggtctgatcaccaaaaagaagtgactcagagg
tgtacaagctgtgaagataatgccgtggctaccagttactgtattgagtgtactgagtgg
ctttgtggaacctgtgttgaagcccatcaaagagtgaagttcaccaaggatcacacagtc
aggaccataggtgggtcaaaatctaaagaaggcgcgcacacggttttctgttcagtgcac
aaacaagaacctctcatgcttttttgcgacacctgtgacaccctgacctgccgtgactgc
caactacaatctcacaaagaccatcagtaccagttcctggatgatgctgttagaaatcag
aggaaaatcctggctgcacttgtcaagcggcttggggagaaacataccaacttgcagaag
tctacaaaagatgtcagagcttcaatccggcaggtgacagacatacaaaagaaggtacag
gtagatgtgaagatggccattctacagatcatgaaagagttaaacaaacgtggtaaactg
ctggtgaacgatgtgcagagggtgactgagggacagcaagagaaactggaaagacagcac
tggaatatgacaaaactgcagagacatcaggagcacattctaagatttgcatcctgggcc
ctggaaagtgacaataacacagcgttgcttctctctaagaagttgatatattttcagcta
caccgtgctttgaagatgattgtggacccagttgagcctttaggagatataaagtttcag
tgggattcagatgtatggacgaaacatgcagaaggatttggtaaaattgtttctgaaaaa
gggggcatcttgcaagctacaaactcttcaatgcctgcccctcaatcaatgtcaagctcc
cacagagcacagaacatgaattctgcaatgggtgcagcaagatcaaactctaaccaagtc
ctggcaccacttaccaacgtgtatcctctaccacagaatcgtccaagagctcccacacct
cagagtcagacatctggtcgactgacagttggagcaacgggcggcttcatgcagcctatg
cagtccttggatggaacggagggctttttagaaggagcgccttccagttatgaaggaact
gtatctggaattaaaaggggccggaccagtgatggtgatgtgactatgttaaagaaggtg
ccacgtgtcagtttggagcgtcttgatgttgatttgactcctgacactcagccaccggtc
ttcaaagtttatcctggacacagcaacgaggattacaatttgattgtaattgaaagagga
aatccatcgagtgaagctgtcataaaggaagaggtaatggagactggaatcgagcctccc
agtgaacaaacatgcgagttgaacatccctggtcatgtatcccctgtagagagtttgaca
cgtgtaacctcttcacctgctgttggccctgttcaagatgtagcagctccagaaatccag
cccttccaaacggttgtggaagctactgagaattccaacctaaaatgcaatgtctgtcag
acgtctggagtattgctgacctgtaagcaatgtcaaatgcactaccatgcagagtgtcac
attcctgtgatccaagagcatcccagtggcgaatggaagtgcttgctatgtcaagacctg
cctggagatgaaaatcagcctcatggtgatggtacagtgacagaccagcctgtggctaaa
atgtcacagtccaaccaaaagaaatgtgagcgccttttactggaattgctatgctatgaa
ctctgtcggcccttacagaggctgtctacttccttggagaaggatgatcccatcaacctt
actacgataagatgtaggcttcaggagtctctctcacccatttatgccagtccagaagaa
tttgtacgtgaggtctgtgtgatgtttaagaaggtcagcaagcatgcagaggacaaggag
gttgttcaatccctcatcggccttcagtccttttttgagaccaaactcagcagtttgttt
gcagacccgaaaatcttgtctgtgatgggtgacgttatgtctgaagatcagcagagcgaa
agcagcggccttactcaccaaagctccccggtcagcacaaccagtgatgttgtttcagtt
ccaaaaccacccggagatgatgaatga
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