KEGG   Pleurodeles waltl (Iberian ribbed newt): 138246176
Entry
138246176         CDS       T10800                                 
Symbol
LIG1
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pwl  Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl03030  DNA replication
pwl03410  Base excision repair
pwl03420  Nucleotide excision repair
pwl03430  Mismatch repair
Brite
Enzymes [BR:pwl01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     138246176 (LIG1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     138246176 (LIG1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     138246176 (LIG1)
DNA replication proteins [BR:pwl03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    138246176 (LIG1)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     138246176 (LIG1)
DNA repair and recombination proteins [BR:pwl03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     138246176 (LIG1)
   NER (nucleotide excision repair)
    Other NER factors
     138246176 (LIG1)
   MMR (mismatch excision repair)
    Other MMR factors
     138246176 (LIG1)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C mRNA_cap_enzyme
Other DBs
NCBI-GeneID: 138246176
NCBI-ProteinID: XP_069056598
LinkDB
Position
7:complement(1282994431..1283290914)
AA seq 1154 aa
MQRTIMSFFQAKPGANIKKEEKDGTKTAAKSPKTEESPKGSKKSERHLKERNGVESPVTR
PPKKYSRIIESDSSEEEEEHMEVEEEQTRKPQSKAKFSRKEKSLEKKIESPAKKSDAMKE
KESSEEESEIPSKVKKPSKNTSLEKKTDSQIKKKNESAAKCEELSKEEESTPAECKMLTK
GDKMEVETPSKGGKPSTKVESVKTPLKSVVKQEQVAVLKTPRTESSLDVSSPASDRSGES
PLSSDPMVISPSGIPKRRTARKQFPKRKLETTTNGDVGGREEAETTEADSKRQRMETDNG
VENIKEEQAKVTQQGDKTMKVEESAVPSSEVIQMNDSKPATTQVTKADSGLEPSKKSASE
GLEDMETVEEPEVKEVAQKEPEKPTRPISSFFAPKKSSPKAEKDKKLEKIEKVKDVDSKQ
VKKEKNLILEEKSQSEEKTKAEKVKEKKTENVEKKVEDKKKTENELDKPSIQKASPGARD
KGAAVSSFFGTSKSETSEDSVEYNPSKSSYHPVKDACWSHGQKVPYLAVARTFEKIEDES
ARNKNIETLSNLLRSVIALSPEDFLPCVYLCLNRLGPAYEGLELGIGETILMKAVAQATG
RQLDKIKAEAQEKGDLGLVAESSRSNQRTMFAPPKLSAIGVFNKLKEIAKMSGSASMNKK
IDIIKGIFVACRHSEARYIVRSLAGKLRIGLAEQSVLSAIAQAVCVTPPGQEFPPEVVDA
GKGKSTEARKAWIEERAMILKQTFCELPNYDAIVPVMLEHGIESLPKHCRLSPGIPLKPM
LAHPTKGIGEVMKRFDEAAFTCEYKYDGERAQIHILENGDVHIYSRNQENNTTKYPDIIA
RIPKCKKDTVISCILDTEAVAWDAEKKQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDML
YLNGESLVKEPFAKRRKLLRDSFVETEGEFMFATFMDTANTDEISEFLEQSIKDSCEGLM
VKTLEQDATYEIAKRSHNWLKLKKDYLEGVGDTLDLVVIGGYLGKGKRAGMYGGFLLASY
DEESEEYQTICKIGTGFTEDDLEKHHTFLKDQVIEKPRSYYRWDSATEPDNWFDAVQVWE
VKCADLSISPVHKAALGLVDEEKGISLRFPRFLRIRDDKKPEEATNSVQVADLYKKQQQI
QNQNAPEKTEEDFY
NT seq 3465 nt   +upstreamnt  +downstreamnt
atgcagcgaaccatcatgtcttttttccaggctaagcctggggcaaatataaagaaggag
gagaaagatggaacaaagactgcggcgaaaagtcccaaaactgaggaatcgcccaaaggg
tctaaaaaatctgagaggcatttaaaagagaggaatggagtggagtccccagtaacccgc
ccacctaagaaatattcacggattatagaaagtgatagctctgaagaagaggaagagcat
atggaggtggaggaagaacagacgagaaagcctcaatccaaagctaagttttctaggaaa
gaaaagtctttagagaagaaaattgagtcaccagccaagaaatcagatgctatgaaggaa
aaggaatcgtctgaggaggaaagtgagattccatccaaagtgaagaaaccatcgaagaac
acatccttggagaagaaaacggactctcaaatcaaaaagaaaaacgaatctgctgcaaaa
tgtgaggaactgtccaaggaggaagaatccactccggctgaatgcaaaatgctaactaaa
ggtgataagatggaagtggagacaccatccaaaggtggaaaaccatcaacaaaggttgag
tcggtgaagaccccactcaagagtgttgtgaagcaggagcaggtggctgtattgaagacc
ccacgaacagagtcctctctggatgtgtcttcacctgctagtgataggtctggagagagc
ccactctcctccgatccaatggtcatctccccttctggcatcccaaagcgaagaacagct
cgcaagcagttcccaaaacgtaaactggaaactacgacaaatggtgatgttggtggcaga
gaagaggctgagacaacggaggcagactccaagaggcagcggatggaaactgacaatgga
gtggaaaacatcaaggaagagcaggctaaagtcactcagcagggtgacaaaaccatgaaa
gtagaagagtcggcggttccaagttctgaggtgatacaaatgaatgattctaaaccagcg
accacgcaagtgacaaaagcagattctggattggagccttcaaaaaaaagtgccagcgaa
ggattagaagatatggagactgtagaggaacctgaagtgaaagaggtggcacaaaaggag
ccagagaagcccacccgacccatcagcagcttttttgctccaaagaagtcctcgccaaaa
gcagagaaggacaaaaagttggaaaagattgagaaggtgaaagatgttgacagtaagcaa
gtaaagaaggagaaaaatttgatattggaagaaaagagtcagtccgaagaaaagacaaag
gccgaaaaggtgaaggagaagaagactgaaaatgtggagaagaaagtagaggacaaaaag
aagactgaaaatgagctggataagccgagcattcagaaagcctctccaggggcacgtgac
aaaggtgcagcagtcagtagcttctttggcacttcaaagtcagaaacttcagaagattct
gttgagtacaacccatcaaagagcagctaccaccctgtgaaagatgcctgctggagtcat
ggacagaaagttccatatctggctgttgctcggacgtttgagaagattgaggacgaatct
gccaggaataagaatattgaaacgctgagcaacctcctgcgctccgtgatcgccctgtcg
ccggaggacttcctgccatgtgtgtacctgtgcctgaacaggctgggcccggcctacgag
ggactggagctcggcatcggagagaccatcctcatgaaggctgtagcccaggcaaccggt
cgccagctggataagatcaaggccgaggcacaggagaagggagacctgggattggtggca
gaaagcagccgcagtaaccaacgcacaatgtttgctccacccaaactttctgctattggt
gtctttaacaaactcaaggagatagccaagatgtcaggaagcgcgtcaatgaataagaaa
attgatattatcaagggtatattcgtggcctgccgacactcggaagcacgttatattgtt
cggtctttggctggaaagctccggattggtcttgcagagcagtctgtcttgtcggctatt
gcgcaggcagtgtgcgtcactcctccagggcaagagtttccccctgaagtggtggatgct
ggcaagggaaagtctacggaagcccgcaaggcctggatagaggagagagccatgatcctg
aaacagaccttctgtgagttgcccaactatgatgccattgttcctgtcatgctggaacat
ggaattgaaagcctgcccaagcactgtcggctttcaccaggtatccctctgaaaccgatg
ttggcacacccaaccaagggtattggagaagtgatgaagaggtttgacgaagcagccttc
acctgcgagtacaagtatgatggcgagcgagcccagatccatatcttggagaatggcgat
gtgcatatctacagcaggaaccaggaaaacaacactacgaagtatccagatatcattgca
agaattccgaagtgcaaaaaagacacagtgatatcctgtatcctagacacggaggcggtg
gcctgggacgcagaaaagaaacagatccagcctttccaggttctcaccacacgcaagagg
aaggatgtggatgcctccgagattaaagtgcaggtctgcgtctatgcctttgacatgctg
tacctgaatggagagtctcttgtgaaggaaccatttgcgaaaaggcgcaagctgttgcga
gattctttcgtagagacagagggagagttcatgtttgccaccttcatggatacagccaac
acagatgagatttcagagttcctggagcagtctattaaagattcctgtgagggtctgatg
gtgaaaacactagaacaggatgccacctatgaaatcgccaagaggtcccataattggctg
aagttaaagaaagattacctggaaggtgttggagacacgttggacttggttgtcattggt
gggtaccttggtaagggtaaacgggcaggcatgtatggaggattccttctggcttcctat
gatgaagaaagtgaagaataccagactatctgtaagattggcactggattcaccgaagat
gatctggaaaaacatcataccttcctgaaggaccaggtgatagaaaagccacggagctac
tatcgatgggatagtgctactgaaccagataactggtttgatgctgtgcaagtatgggag
gtgaaatgtgcagacctctccatttcacctgtgcacaaggcagcactaggtctggttgat
gaagaaaaaggaatttcactccgtttccctcggttcttgcgtattcgtgatgataaaaag
ccagaagaagcaactaatagcgtccaggttgcagatctgtataagaagcaacagcaaatc
cagaaccagaatgcacctgaaaagactgaagaagatttctactag

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