Pleurodeles waltl (Iberian ribbed newt): 138246406
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Entry
138246406 CDS
T10800
Symbol
SHANK1
Name
(RefSeq) SH3 and multiple ankyrin repeat domains protein 1
KO
K15009
SH3 and multiple ankyrin repeat domains protein
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_4
SAM_1
Ank_5
SH3_2
SAM_2
Ank_3
SH3_9
PDZ_6
SH3_1
PDZ
FERM_f0
SAM_PNT
Motif
Other DBs
NCBI-GeneID:
138246406
NCBI-ProteinID:
XP_069057095
LinkDB
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Position
7:1392738223..1394143006
Genome browser
AA seq
1933 aa
AA seq
DB search
MPQSPVSSEEERRSVSEYPGGESDSESSREDTVRGGKSNPTPTTSKPGVNPLSSSSIAAR
RIKERSMSVPDDSHFSMMVFRIGIPDLHQTKCLRFNPDATIWVAKQQILCTLNESLKDVL
NYGLFQPATNGRDAKFLDEERLLREYPQSFEKGVPYLEFRYKTRVYKQTNLDEKQLAKLH
TKAGLKKFLEYVQHGSADKIARLLDKGLDPNYHDSETGETPLTLASQQDGTIEVIRILCL
GGAHIDFRSRDGMTALHKAVCCRNYSALMALLDLGGSPNHKDRRGLTPLYHTAIVGGDPR
CCELLLYNRAHIGTLDENGWQEIHQACQYGHTQHLEHLLFYGADPGAQNASGNTALHICA
LYNKESSARILLYRGANKEIKNHNGQTPFQVAVISGNFELGELIKSHREADVVPFQETPS
YAVHRREGGKPLTVPHVLTRANSDNSLSLPDWMVFSPSTTSTVTLQGHKNTIGTLRSSSS
PRGARSRSPSRTRHVEDAKKQPRGRPSSTGYAKEASSGGGSLNNRMKRKLYSAVPGRTFV
VVKPYQAQGDGELSLSKGEKVKVLSVGEGGFWEGNIKGRTGWFPSDYVEEIAVKPQEGKQ
VESRSDKAKRLFRHYTVGSYDSFDAPSDYIIKEKTVLLQKKDSEGFGFVLRGAKAQTPIE
EFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNN
LMVKVVMVTRNPEMEEAMRKKAPQQTRRVTPPAISLRSKSMTSELEEMEYQETPSPIPEY
EKKRTVYQMALNKLDEILAAAQQTISVNEGTSPSGLSSLGKSRSATGKGFFTPEASFEQH
RVPGLTSGPQSVYDRPSYMASTPSQAMMMRQRSIGTGDDDKPFLSAPLMKFTRSLSVPSS
EDIPPPPTTSPPDPPFNSASSPTARVGPNAKSPFSPSSEPRSYSPSLHQEPGRFDQQMLE
QQQQQQQQQQQPQRREKVQHTLYHQDSDQGAEDQPRANMAAQSSMRSWRSQPQEIRYFNL
PARAASTAMYVPAKAARRKGLVKQVKVEDEQHQQYQKQQHHHHHQQQHQPKQQQQQEKNS
IPIPTIIIKAPSTSSSGRSSQGSSMEAEIQPDPIPSLQLRDNIDFTSQFGAAIVGAARRD
REWYNEARRKSALFLSTDLPDEEPEPTPAPRLKQSKSIDEGMFASEPYMHLNIPANFGLP
ESIGIASGFSYQPKTGKVYGSSTTSAFSTVCSTFIPPLQAHTTGPALSTISPVGSVTSAL
IHPLTGKVLDPSSPLGLALAARERALKESQQQSRSVAEERKSRSSSPRFGESSRSSTESH
GGTSLRLWGSGQRREIEYKPCMVSPNTEKRSEGSPRHSPSGHLMHQGPERGKSWKERGEE
NEKIELHVRFMENCRNKSEEEDESKGSAGNEEKREAPSPSTSESHPNFSGRNSGRNECFK
EENGLPLLVLPPPAPSIDVDDDFLFTEPLPPPLEFSNSFDKAESPPSTSCGETTLPPPVP
PPPPDSAITPNLDSTTSSLTSYDSEVATLTQGASEPKEPHVNFSSVVSSIQIPASDTIET
VIDSGIEEIDSRSSSDHHLETISSVSTLSSMSGLSTEGTELLDTYITYLDGQAFGAEKTP
LQTKIRSRTFPSRVPGALRDPITATSTTISIAPCTENLFTLPSPLGTSLGTPPEPSKESI
RKSPTLPWEECSQGKGLANSSMKSSIMNELSSKLQQMSGVSWSRPSESSVSFTSDRSSSL
HRHRFADDSSSTLISTKPVSSLYHNWPKSPQPVPKHPKSVDFDIRPSLRRAPSPSILSTE
HKINPTPRPSSLPILPTAPVYTGIYDLRGSPTSGGDSFPTFSSGSRSLSPTHFMPPPSDK
SFAAKPLHFWTKFDVADWLEYLNLGEHREHFLDNEIDGSHLPSLTKEDYIDLGVTRVGHR
MNIDRALKFFLER
NT seq
5802 nt
NT seq
+upstream
nt +downstream
nt
atgccccaaagtcctgtgtcaagcgaggaggagaggaggagcgtatccgaataccctggt
ggggagtcggattcagagagctccagagaggacaccgtccgtggtgggaagagcaatccc
actcctaccaccagcaagcctggtgttaaccctctctcctcctcttcaatagcagctcga
cggataaaagagcggtccatgtctgttcctgatgattctcatttcagcatgatggttttt
cgtattgggattcctgacctccatcaaacaaaatgcctgcggttcaaccccgacgccact
atctgggtggcgaaacagcagattttgtgcaccttgaatgaaagcctgaaggatgttttg
aactatggccttttccagccagccactaatggacgggatgccaagtttctggatgaggaa
cgccttttgcgagagtacccacagtcctttgagaaaggtgtcccctacttggagttccgg
tacaagacgcgtgtttataagcagaccaacctggacgagaaacagcttgccaaactccac
accaaggctggtttaaagaagttccttgagtacgtgcaacatggatctgctgacaaaata
gctcgactgctggacaagggactggacccaaactatcatgattcagaaactggagagact
cctctgacactggcctctcagcaggatggtaccatcgaggtcattcggattctttgcctg
ggaggtgcccacatcgacttccgctcccgagatggcatgacagcactccacaaggctgtg
tgctgccggaactacagtgcactcatggcacttttggacctggggggttctcccaatcac
aaagatcgtcgtgggctgactcctctgtaccacacagcaatcgttggaggagacccacgc
tgctgtgagctcctcctttacaacagagctcacattggcacgctggatgagaacggctgg
caggagatccatcaggcctgtcagtatggacacacccaacatttggaacaccttctgttt
tacggagcagatccaggagcacagaatgcctcaggaaacacagccctccacatctgtgca
ctctacaacaaggaaagcagtgctcggatcctgctttaccgaggtgccaacaaagagatc
aagaatcacaatggacagacaccttttcaggttgctgtgatttcagggaactttgaattg
ggagagctgataaaaagtcacagagaagcagatgttgttccattccaggaaactccaagc
tatgcagtgcatcggcgagagggtgggaagcccctcacagtgccacacgtcttgacacga
gcgaacagcgataacagcctgtctctacccgactggatggtcttctctccctctacaacc
agcaccgtcaccctacaagggcataagaataccattggcaccttgcgcagttccagcagc
ccgcggggagcccggagccgctccccgtcaagaactaggcacgtggaggatgccaagaag
cagccccggggaaggcccagctccactggttatgcgaaggaggcatcttcaggaggtggc
agtttgaacaaccgcatgaagcgtaagctgtattctgctgtgccaggacgtacgtttgtg
gtggtaaagccataccaggctcaaggcgatggagagctctcactcagcaaaggagaaaag
gtgaaagttcttagtgttggagaagggggattctgggaaggcaatatcaaaggtcgcaca
ggatggttcccttcagactacgtggaagagatagctgttaagccccaagaaggaaaacaa
gtggagagccgaagtgataaagccaagcgccttttcaggcactacacggtgggctcctac
gacagctttgacgcccccagtgactacattatcaaagagaagacagtgctgttacagaag
aaagacagtgaagggtttggatttgtgctgagaggagccaaagctcaaactccaatcgaa
gagttcactcccacaccagcgtttccagcactgcagtacctggaatctgtagacgaaggt
ggtgttgcctggcgcgcaggactccggatgggggactttttgattgaggtgaacgggcag
aatgtggtgaaggtgggacatcgacaggtggtgaacatgatccgacagggtggaaacaat
ctgatggtgaaagttgtcatggtgaccagaaaccctgaaatggaggaggccatgaggaaa
aaagctccacagcagaccaggcgtgtcacccctcctgcaatttcgctgcggtccaagtct
atgacctcggagctggaagaaatggaataccaggagacaccatcccccatacctgaatat
gagaagaaaaggactgtttaccaaatggcactaaataaactggacgagatcttggctgct
gcccagcaaaccatcagtgtgaatgaaggaacaagtcccagtgggctttcttctctggga
aaatcacgttccgccaccgggaaaggctttttcaccccagaggcgagctttgagcagcac
cgtgtcccaggactgacttcgggacctcagtctgtttatgatagaccttcatacatggct
tccacaccttcgcaggccatgatgatgcggcagaggtcaattggaaccggtgatgatgat
aagccattcttgtctgcgccactcatgaaattcacccgcagcctgtctgtaccaagctca
gaagacatcccacctccacctacgacatcgccacctgatccacccttcaacagtgcctct
tctcccactgcccgagttggcccaaatgccaagtcccccttcagtcccagctcagagccc
aggtcatattcaccatcgctgcaccaggagcctggccgttttgatcagcaaatgctagag
caacagcagcagcagcagcagcaacagcagcaaccgcagaggagagaaaaggttcaacac
acactttaccatcaggactcagaccagggtgcagaggaccaaccacgtgcaaacatggca
gcacagtcttctatgaggagttggaggagccaaccacaagagattcgttacttcaacctt
cctgctagggcagccagcactgccatgtatgtgcctgcaaaggcagctcgcaggaaagga
ctggtgaagcaggtgaaggtagaggatgagcagcatcagcagtatcaaaaacaacagcat
catcatcaccatcaacaacagcatcagccaaagcaacaacagcagcaagaaaagaactcc
attcccatccccactattatcataaaggccccatctaccagcagtagtggtcggagcagt
caaggaagcagcatggaggcagagattcaacctgatccaatcccgtctctacagcttagg
gacaacattgacttcaccagccagtttggagccgcaattgttggagcagcacgtcgggac
cgagaatggtataatgaagcccgacgcaagtcagcattatttttgtccactgacttgcca
gatgaggaacctgagcccacaccagcacccagactcaagcagtcaaaatccattgatgaa
ggcatgtttgccagcgagccttacatgcacttgaatatccctgctaactttggacttcct
gagagcattggcattgctagtggattctcttaccagcccaaaactggcaaagtctatggt
tccagtaccactagtgccttcagcactgtgtgttcaactttcataccaccactccaggct
cacaccactgggccagctttgtccactatcagccctgttgggagtgtgactagcgcactg
atacatcccttgacaggaaaggtcctagaccccagttcacctcttggtcttgcattagct
gccagagagagagccttaaaggaatcccaacagcaaagcaggagtgtagctgaagagagg
aaatcccgatcttcgtccccacgttttggagagtcctccagatcctctactgaatcccat
ggtggtacatctctccgactgtggggatctgggcaaaggagagagatagagtacaagccc
tgtatggtatcaccaaacaccgagaagaggtcagaaggaagccccagacatagtccttct
ggacaccttatgcatcaagggccagaacgtgggaaatcatggaaggagcgtggtgaagag
aatgagaagatagaactgcatgtacgtttcatggaaaactgcagaaacaaatcagaagaa
gaggatgaaagtaagggatcagctggcaatgaagaaaaacgagaagcaccctcaccgtca
acttcagagtcccatcccaacttttctggcaggaattctggacgcaatgagtgtttcaag
gaggaaaatggccttccgcttcttgtccttcctcctcctgccccttcaattgatgtagat
gatgacttcctcttcacagagcctcttcctccacctttagagttttccaacagctttgac
aaggcagagtctcctcccagtacatcatgtggagagactacacttccacctcctgttcca
cctcctccccctgattcggccatcactcccaatttagactccaccacctcgagtctcacc
tcatatgacagtgaagtggctactttaacgcagggggcttctgaacccaaagaacctcat
gttaacttttcatcagtagtgtcatcaattcagattccagcttcagacactatagagaca
gtcattgattctggaatagaggaaattgacagccgaagcagtagcgatcaccatctagag
acaatcagcagtgtctccacattgtccagcatgtctggcctctccacagaaggcactgag
ctgcttgacacatacatcacatacctagatgggcaagcttttggggctgaaaagactcct
ttacaaacgaagatccgatccagaacgttcccaagcagagtaccaggagcactcagggat
cccatcactgccaccagtacaaccatttctattgccccatgcactgaaaacctcttcact
ctgccctcacccctggggacttcacttggcactcctcctgagccatcaaaagaatccata
cggaaatcaccaacattaccatgggaagagtgctcacaagggaagggattggcaaactcc
agcatgaaatctagcatcatgaatgagctgagctcaaagctacagcaaatgagtggtgtg
tcctggtccaggccctctgaatcatcagtgtccttcacatcagacaggtccagctcactc
cataggcacaggtttgctgacgattcttcttctaccttgatctctaccaagcctgtgagc
agtctgtaccacaactggccgaagtctccacaacctgtgccaaagcaccccaaaagtgtt
gattttgacatccgcccttctctgagacgagcacccagcccatcgattctgtccacggag
cacaagatcaaccccacacctcgcccttcgtccttacccattttaccaactgccccagtc
tacactggaatctacgaccttcgagggtctcccacatcaggaggcgattctttccccacc
ttctcctccgggagtaggtccctctcccctacacacttcatgcctcctccatcggacaaa
tcttttgctgctaagcctctgcacttctggacaaagtttgatgtggctgattggctggaa
tacctgaacttgggagagcaccgggaacactttctggacaatgaaatagatggcagtcac
ctgccttctctcaccaaggaggactacattgatttgggagtaaccagagttggccatcga
atgaacatcgaccgagctcttaaattcttcttagagaggtga
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integrated database retrieval system
