Pleurodeles waltl (Iberian ribbed newt): 138247114
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Entry
138247114 CDS
T10800
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl03018
RNA degradation
Brite
Enzymes [BR:
pwl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
138247114
Messenger RNA biogenesis [BR:
pwl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
138247114
mRNA degradation factors
5'-3' decay
Decapping complex
138247114
Chromosome and associated proteins [BR:
pwl03036
]
Eukaryotic type
Gene silencing
piRNA pathway
138247114
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
138247114
NCBI-ProteinID:
XP_069057960
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Position
7:1553836536..1553916659
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AA seq
495 aa
AA seq
DB search
MATVRTENPLVMTLGGLNGQTKAQHGLATGLSTSGHSAKSATSAQFATQQQAQPGSTTLK
FGDDWKKKLQLPPRDQRVRTTDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESI
PIALSGRDILARAKNGTGKSGAYLIPLLERLDVKKTHVQALVLVPTRELALQVSQICIQL
SKHMVGEVKVMASTGGTNLRDDILRLDETAAILRAGSWGACAPRSPCNAELCLDVVHWRF
RLLILEDSSLGVGKKDSTVADKLLSQDFVVILEEILTYLPGNRQILLYSATFPISVQKFM
SRYLQKPYEINLMDELTLKGITQYYAYVNERQKVHCLNTLFSRLQINQSIIFCNSTQRVE
LLARKISQLGYSCFYIHAKMMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVIN
FDFPRNAETYLHRIGRSGRFGHLGLAINLITAEDRFNLKAIEDHLCTEIKPIPGSIDKSL
YVAEYHSQQPPEDEP
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atggcaactgtgaggacagaaaaccctctggtgatgacactggggggtttaaatgggcaa
accaaagcccagcatggtttggcaactggactttctacctctggacattcggcgaaatct
gctacatctgctcagtttgccacccagcagcaagcccagcctggaagtacaacactcaag
tttggtgatgactggaagaagaaacttcagcttcccccaagggatcagcgagttaggaca
acggatgttacagctacaaaaggcaacgagtttgaagattactgtctaaagcgtgagctt
ctcatgggtatctttgaaatgggctgggaaaagccatctccgattcaggaggaaagtatt
cccatcgcactttctggacgagacatccttgcaagagccaagaatgggaccgggaagagc
ggtgcttacctcatccctctgctggagagacttgatgtgaagaagactcacgtccaagct
ctcgtcctggtgcccacccgagagctggctctgcaggtgagtcagatctgtatccagctc
agcaagcacatggtgggagaggtcaaagtcatggcatccacaggtggcaccaatcttcga
gatgacatcctgcggttggacgagacagctgctatcctgcgggcagggtcttggggtgct
tgtgctccccgcagtccctgtaacgctgagttgtgcctggatgtagtgcactggcgtttc
aggcttctcatcctggaggatagcagcctgggggtgggcaaaaaggattccacagtagct
gacaagctcttatctcaagattttgtggtgattctagaggaaattctcacgtatttacct
ggaaaccgtcagatcctgctttactctgccaccttccccatcagtgtacagaaattcatg
agcagatatttacagaaaccttatgaaataaacctgatggacgagctcaccttgaaagga
ataacccagtactacgcctacgtgaacgagcggcagaaagtgcattgccttaacacgcta
ttctcccggttgcaaatcaaccagtcgatcatcttctgtaactcgacccagcgagtagag
cttcttgctaggaagatctcccagctcggttattcctgcttctacatccatgccaagatg
atgcaggaatacaggaatcgtgttttccatgacttccggaatggtctgtgtcggaatcta
gtctgcacagatctcttcactcgaggaattgatattcaagctgtgaatgttgtaatcaat
tttgacttcccgcggaatgcagaaacctatcttcaccgcattggcagatctggtcgcttt
ggacacttgggtttggccataaatttgatcactgctgaggaccgtttcaatcttaaagca
attgaagatcatctttgtactgaaatcaaacccattccaggcagcattgataagagcctg
tatgtggcagagtaccacagccagcagccgccggaggacgagccctga
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