Pleurodeles waltl (Iberian ribbed newt): 138247430
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Entry
138247430 CDS
T10800
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl03030
DNA replication
pwl03410
Base excision repair
pwl03420
Nucleotide excision repair
pwl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
138247430 (RFC1)
03410 Base excision repair
138247430 (RFC1)
03420 Nucleotide excision repair
138247430 (RFC1)
03430 Mismatch repair
138247430 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pwl03032
]
138247430 (RFC1)
03400 DNA repair and recombination proteins [BR:
pwl03400
]
138247430 (RFC1)
DNA replication proteins [BR:
pwl03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
138247430 (RFC1)
DNA repair and recombination proteins [BR:
pwl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
138247430 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_14
RuvB_N
BRCT_2
AAA_18
AAA_30
AAA_33
AAA_16
AAA_17
AAA_5
AAA_7
nSTAND3
Rad17
Zeta_toxin
NTPase_1
RNA_helicase
AAA_19
NPHP3_N
AAA_28
Motif
Other DBs
NCBI-GeneID:
138247430
NCBI-ProteinID:
XP_069058165
LinkDB
All DBs
Position
1_2:1024856062..1025478139
Genome browser
AA seq
1134 aa
AA seq
DB search
MDIRKFFGVVTSGKKPASELEKKEKIKSGDGPSIKKKKDKAKSPANDGDSEHKQANKKKR
IIYDSDSEEEAPQPMKKSRKPSHQSPQKKCSAEKSPSTLQHAKIPKKDPITYVSETDEEE
ELAGRKKSLKPKENGTSVASHILSTVDVGKQADYKTQAKAKPSAHMQLTPTSALDYFGTA
SVHRSDKKLVSSKRKEPIESAGDSTLDDETIAKQLQLDEDAELERQLHEDEEFARTLAML
DEAPKNKKARKDSEEKETLIDKSSPNTLTKQKQSSTVKTLSTSEETANICRNERVKSERG
KVPSLHSELSAAKTGNLTSTLKASTKLANMKQKDEGQKKEKNNASPTSKEKSVQPTEEKT
KKKEKTSPQKTESSPEDSEKRRSNVKAYRNFLNRDGPRALGSKEIPQGGENCLEGMTFVI
SGVLESIERDEAKSLVERYGGKVTGNVSKKTNYLIMGRDGGESKREKAESFGTRIIDEDG
LFNLIRTKPAQKSKYEIKAELEVKKSKIKLEETPEKNEPGKKKRSPTKEEVEHKNSLTDT
KGVSDVFKTGLQERLTPKPESLSKGDSLLWVDKYKPLSLKTIIGQQGDQSCANKLLRWLK
NWHMNNTSDKKPAASKFSKFGGKDDGSTFKAALLSGPPGVGKTTTASLVCEELGYSYVEL
NASDTRSKNSLKDVVAESLNNTSIKGFYCGSSKSVSMKHALIMDEVDGMAGNEDRGGMQE
LIGLIKHSKIPIICMCNDRNHQKIRSLANYCFDLRFQRPRVEQIKGAMMTIAFKEGLKIP
PPAMNEIILGANQDIRQVLHNLSMWCARNKAMTYDEAKGNANSARKDIKMGPFDVARKVF
VTGEETDHMTLIDKSDLFFHDYSLAPLFVQENYIHVKPVAAGGNMKKHLLLLSKAADSIC
DGDLVDKQIRTKQMWSLLPTQAIYASVLPGELMRGYMTQFPTFPSWLGKYSSTGKHDRIV
QELSRHMCLRTLTCKGGMNMDYLPYMRDALVRPLASHGADGVQEVVDFMDTYYLIKEDVE
NIMEISSWGGKPSPFSKLDPKVKAAFTRGYNKEAHMTPYSLQVVKASKRGAASLPDSEMN
EDPTLDDSLPDEKDEDIETDAMIKAKKMKASKAASKSEKSGEVKKGKGKGKKTK
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atggatataagaaagttctttggagttgttacaagtggaaagaagcctgctagtgaactt
gaaaagaaagagaaaataaaaagtggtgatggcccatccataaaaaagaaaaaggacaag
gcaaaaagtccagctaatgatggtgattctgaacataagcaagccaacaagaaaaaaagg
ataatctatgattcagattcggaagaggaagctccacaaccaatgaaaaagtcaagaaag
ccatctcatcaatcaccacaaaaaaagtgttcagcagaaaaatctccatctaccttgcag
catgctaaaattcccaaaaaggatcccatcacctacgtttctgaaacagatgaagaagaa
gaacttgctggtagaaagaaatccctgaaaccaaaagagaatggcacatctgtggcgagc
catatactgtccactgtggacgtagggaagcaagcagattacaaaacacaggctaaggca
aaaccttcagcacacatgcagctgactcctacatcagccctggattactttggaactgcc
agcgtccacaggtcggacaagaagctagtgtccagcaaaagaaaagaaccaatagaaagt
gcaggtgattccacactagatgacgagactatcgccaaacaactgcagctcgatgaagat
gctgagctggagcgacagctgcacgaggatgaggaatttgcccgaactctggccatgtta
gacgaggcgccaaagaacaaaaaggcgcgaaaggattctgaagagaaggaaacattaatt
gacaaatcaagcccgaacacattgacaaagcagaaacaatcaagcacagtaaaaacctta
agcacttctgaagagacagcaaatatttgtaggaacgaacgagttaaatctgagcgtggg
aaggtgccaagtctacattcagaactctctgctgctaaaacagggaatttaacatccacc
ttaaaagctagcacaaaactggctaatatgaaacaaaaagacgaagggcagaaaaaagaa
aaaaacaatgctagtccaacatccaaagaaaagtcagttcagccaacagaagagaagact
aagaagaaggagaaaacttcccctcaaaagacagagtcaagtcccgaagattcagaaaag
agacgttccaatgttaaggcataccgcaacttcttgaacagagatggtcccagagccctg
ggttcaaaggaaataccacagggaggtgaaaactgcttagaaggtatgacttttgttatc
tccggagtacttgaatcaattgaacgagatgaagctaaatccctggtagagcgctatgga
ggaaaagttactggcaatgtgagcaagaagacaaactacttgatcatgggtcgggacggc
ggggagtcaaagagagaaaaggcagagagttttggaacaagaataattgatgaagatgga
ctgttcaatttgatacgtaccaaacctgcccaaaagtccaaatatgaaataaaagctgaa
cttgaggtaaagaaatccaaaataaaacttgaggagaccccagaaaaaaatgaacctgga
aagaaaaagagaagccccactaaggaggaggtggagcataaaaatagcttaactgatacc
aaaggagtcagtgatgttttcaaaacgggcctgcaggaacgattaactccaaaacctgag
agtctaagcaaaggtgatagtttactgtgggttgacaagtacaagccattatctttgaag
acaataattggacagcaaggggaccagagctgtgccaacaaactattacgttggctgaaa
aattggcacatgaacaatacatcagataaaaagcctgctgcatccaaattcagtaaattt
gggggaaaggatgatggttccacttttaaagcagccctcttgtcgggacccccaggagtt
ggtaaaaccacaacagcatctttggtctgtgaggaattaggatacagttatgtggagctc
aatgccagtgacaccagaagtaaaaacagtttgaaagacgttgtggcagagtctctgaat
aacaccagcatcaaaggcttctattgtggttcctctaaatcagtcagcatgaagcatgcc
ctaattatggatgaagtagacggaatggcaggaaatgaagacagaggaggcatgcaggaa
ttaattggtctcatcaagcattccaagatcccgataatatgcatgtgtaatgatcgaaac
caccagaagatccgttcccttgcaaactattgctttgatcttcgttttcaaaggcctcga
gtggaacagattaagggtgccatgatgacaattgcttttaaggaaggattaaagatccca
ccacctgctatgaatgaaatcatattgggagcgaatcaagatattcgtcaggtgttacat
aatcttagtatgtggtgtgcaagaaataaagcgatgacttatgatgaggccaaaggcaat
gccaacagtgcaagaaaggatataaaaatgggtccctttgatgttgcccgaaaggttttt
gtcactggggaagaaactgatcacatgacactaattgacaagtctgatctctttttccat
gactactctctagcacctttattcgttcaagaaaattacatccatgtaaaacctgttgct
gctggagggaatatgaaaaagcacttgttgcttttgagcaaagcagccgatagcatatgt
gatggtgacttggttgacaaacagatacgtactaaacaaatgtggagtctcctacctaca
caggcaatctatgcaagtgttctcccaggcgaattgatgagaggttacatgactcaattt
cccacctttccaagctggcttggcaaatactcatccacaggcaaacatgaccggattgtt
caagagctatcacggcacatgtgtctgagaactcttacatgtaaaggtggaatgaatatg
gactacttaccgtatatgcgagatgcgttggttagaccattggcttcccatggagcagat
ggtgtacaggaggtagtggacttcatggacacgtactacttgataaaagaggatgttgaa
aacatcatggagatcagcagctggggaggaaaaccaagccccttttccaaactcgatccc
aaggtcaaagccgcattcacccggggctataacaaagaagcccatatgactccttattca
cttcaggtggtgaaagcatcgaaacggggggcagcatctctgcctgattctgaaatgaat
gaagacccaaccttggacgactcactgcctgacgaaaaggatgaggatattgagaccgat
gcaatgattaaggccaagaaaatgaaagcttcaaaggctgcctcaaagtcagaaaaaagc
ggagaagttaaaaaaggcaagggtaaaggaaagaagacgaagtga
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integrated database retrieval system
