KEGG   Pleurodeles waltl (Iberian ribbed newt): 138250336
Entry
138250336         CDS       T10800                                 
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain
  KO
K06237  collagen type IV alpha
Organism
pwl  Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl04382  Cornified envelope formation
pwl04510  Focal adhesion
pwl04512  ECM-receptor interaction
pwl04518  Integrin signaling
pwl04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:pwl00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    138250336 (COL4A1)
   04518 Integrin signaling
    138250336 (COL4A1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    138250336 (COL4A1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    138250336 (COL4A1)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    138250336 (COL4A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pwl04147]
    138250336 (COL4A1)
   00536 Glycosaminoglycan binding proteins [BR:pwl00536]
    138250336 (COL4A1)
Exosome [BR:pwl04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   138250336 (COL4A1)
Glycosaminoglycan binding proteins [BR:pwl00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   138250336 (COL4A1)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 138250336
NCBI-ProteinID: XP_069061210
LinkDB
Position
8:complement(830506849..831028266)
AA seq 1673 aa
MGMGWLQLLPLALLLVQLQGSADAAACTGCGSGNKCDCSGVKGQKGERGLPGLPGIIGFP
GMQGPEGPQGPLGLKGDTGEPGLPGTKGTRGPSGSPGFPGNPGLPGIPGLDGPAGPPGIP
GCNGTKGERGPLGPPGLFGSPGNLGPPGLPGAKGDPGDIIGLLPSGMLKGEQGFPGIPGS
PGSPGLPGLQGPIGPPGPIGLVGLPGKPGPPGPKGSMGLGFQGRKGDKGNPGIQGPPGKD
GGLPVDGPGTSFEKGDKGAPGEKGDKGSPGPRGSSIKGEKGEAGKPGPRGKPGKDGEQGE
KGLDGLPGDSGFPGIPGLNGAKGDKGEIGPQGPPGVVISNGISEVVGEKGERGITGIPGF
PGIKGERGFPGLPGKEGLPGLTTQGPIGAPGIPGEQGQKGERGYQGLPLPGSPGREGIPG
PPGPPGPPGRVDGMECRPGEPGERGLPGQQGKQGFQGESGEKGVKGDSCTTCQSTGTGFP
GLPGPQGPQGEKGIAGQPGSKGDQGLPGFNGIQGLPGPEGPPGLFGSPGAKGEPGEVFYA
PDLKGAKGEPGFPGLPGATGREGRPGFNGQPGPPGSKGESGALGFKGERGPPGDVGFPGP
KGDRGQPGPPGFGPSGVPGDKGNQGAPGISGTTGYPGPKGEKGQTILHTGPPGIPGLPGD
SGLPGDQGDRGAPGLQGKFGLPGEKGEPGAPGIGFPGPPGPKGYSGSPGSPGLPGPPGKA
GFEGFPGLQGEPGQKGEAGVGLPGPKGVQGLQGLPGTTGEKGNIGVPGVPGDQGFPGNSG
PPGARGEPGRVGQPGAPGAPGVPGIGPQGSPGPPGPQGPPGFTGPPGIKGETGLPGFPGL
DMPGPKGEKGFPGPSGISGVPGLPGPPGQPGREGLQGYQGSKGEMGVMGMPGEPGPTGLT
GNPGVPGEKGDPGSPGFPGETGSNGSKGDKGEAGLPGKPGSLTPNDMVHMKGEKGDRGEQ
GEIGREGTPGFRGDPGSPGMPGKDGEEGPAGQPGAKGDPGSPGQPGVPGLPGLKGAMGEM
GYPGTPGEKGVPGVPGPPGQPGFTGLKGDKGIKGETGFPGIGLPGFPGEKGEPGRVGVQG
VPGEKGDKGDTGMPGMHGSPGPKGFPGSPGYPGNPGTPGEKGVEGLPGINGIPGSKGEQG
GPGQPGLPGTIGEKGEPGYDGIPGTPGDKGDPGFPGRGLPGLSGAKGEKGFKGDSGVPGF
PGISGLPGSKGDKGLSGAQGPEGRQGFPGLPGSAIEGPKGARGPQGQPGLAGPPGQEGPP
GPAGIHGSKGDKGDSGWPGTPGYPGIKGEKGYQGFTGEPGTPGNAGQKGDAGPPGVPGFE
GSKGFPGPGGFKGEHGDQGVPGPKGLQGPPGPPGPFQSVKGEPGTPGLPGPAGPKGLPGY
PGPKGQQGVTGLVGLPGESGAPGFDGTPGPKGETGPSGPPGPRGYPGPPGPDGLPGPIGS
PGPPSMAHGFLVTRHSQTTEEPLCPFGMRMIYSGYSLLYVQGNERSHGQDLGTAGSCLRK
FSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGESIKPFISRCSVCEAPAM
VMAVHSQTIQIPSCPEGWLSLWIGYSFVMQTSAGAEGSGQALASPGSCLEEFRSVPFIEC
HGRGTCNYYANAYSFWLATIERSDMFKKPTPSTLKAGDLRTHISRCQVCMRRI
NT seq 5022 nt   +upstreamnt  +downstreamnt
atgggcatggggtggctgcagctgctgcccctcgctctcctcctcgtccagctgcagggt
agcgccgatgcagcggcatgcactggatgtgggagcggaaacaaatgtgattgcagtgga
gttaaaggacaaaaaggtgaacggggattgccaggcctgcctggcattattggctttcct
ggaatgcaaggacctgaggggccacagggaccactaggattgaagggtgatactggggag
ccaggcctgcctggaacaaaagggacaaggggaccctctggctcacccggattcccagga
aacccaggtcttcctggcatccctggtctcgatggtccagccggcccacctggcatccct
ggttgcaatggcacaaagggggagcgaggtcctcttggccccccggggttatttggatca
cctggaaatttgggaccaccaggacttcccggagcaaagggagacccaggtgatatcata
gggctattaccatccggcatgctgaagggagagcaagggtttcctggaattcctggatca
ccgggatctccaggactaccaggattacagggacccattggaccacctgggccaatagga
cttgtgggcttaccgggcaaacccggaccaccaggacctaagggttctatgggattgggt
tttcaaggacgaaagggagataaaggaaaccctggtattcaaggacctcctggtaaggat
ggaggtttaccagtggacgggccaggaaccagttttgaaaagggtgacaaaggtgcacct
ggtgagaaaggtgataaagggtcaccgggaccacgaggatcgagcatcaaaggagaaaag
ggtgaagctggaaaaccagggccgcgtggaaaacctggaaaagatggtgaacaaggagaa
aaaggccttgatggtctcccaggggattcaggatttccaggaataccaggtctaaatggc
gctaagggagacaaaggagagattggtcctcaaggcccccctggagttgttataagcaat
ggaatatcagaagttgttggtgagaaaggggaacgaggcattacaggcataccgggtttc
ccaggaatcaaaggcgagcgaggttttccaggtctgcccgggaaggaaggtctaccaggt
ttaacaactcaggggcctattggagccccaggtattccaggagagcagggtcaaaaagga
gaacgtggttatcaaggattacctcttccaggatccccagggagagagggcatcccagga
ccaccgggtccgccagggccccctggaagagtcgatggaatggaatgcagacccggagaa
cctggtgagagaggcctcccagggcaacaagggaagcaaggatttcaaggagaaagtgga
gagaaaggtgtcaaaggagatagttgcaccacgtgtcaatctactggaactggatttcct
ggactgcctggtccgcaagggcctcagggagaaaaaggaattgctggacaaccaggttct
aaaggagatcagggattacctggatttaatggcattcaaggtttgcctggaccggagggt
ccgccgggattattcggcagtcctggggccaaaggagagcctggggaagtgttctatgcc
ccagaccttaagggagccaagggagaaccaggattcccaggactgccgggtgcaacagga
agggaaggaaggccaggatttaatggccagccagggcccccaggctccaaaggcgaatcg
ggtgcattgggtttcaaaggtgagcgaggaccaccgggtgatgttggatttcctggccct
aaaggtgatagaggccaacccggcccaccaggatttggcccatcgggcgtgccgggtgat
aaaggcaatcaaggtgctccaggcatttccgggacaactggatatccaggaccaaaaggg
gaaaaagggcagactattcttcatactggaccccctgggatacctggactaccaggagat
tccggccttcccggtgaccaaggggacagaggtgctcctgggcttcaggggaaatttggg
cttccaggtgaaaagggtgaacccggtgcaccaggcataggatttccaggtcctcctggg
cccaaaggttattctggttcaccaggcagtccaggtttaccaggtcctccaggaaaagct
gggtttgagggatttccaggtttgcagggtgaaccaggtcaaaagggcgaagctggtgta
ggtcttccgggacccaaaggagtgcaaggacttcaaggcctaccaggaactactggagaa
aaaggcaacataggggtgcctggcgtgcctggagatcaaggttttccaggaaactctggt
ccaccaggagcacgaggtgaacctggtcgagttggacagccaggcgcacctggtgcccca
ggtgtaccaggaataggcccacaaggttcaccgggacccccaggaccacagggccctcct
gggttcacagggcctccagggataaagggagaaactggactcccaggatttccagggctg
gacatgccaggaccaaaaggcgaaaagggttttcccggaccttctggaatttcgggggta
ccaggtttacctggcccaccaggtcaacctggaagagaaggtctgcaaggttatcaagga
tccaaaggtgaaatgggagtcatggggatgcctggagaaccagggccaactgggttaact
ggaaatccaggggttcctggagagaaaggtgatccaggttctcctggttttcctggcgaa
acagggagtaatggatctaaaggtgacaagggtgaagctggtctgcctggaaaacccgga
agtcttacaccaaatgacatggtgcatatgaaaggcgaaaaaggtgacagaggagagcaa
ggggaaataggacgagaagggacaccagggtttcgaggggaccctggaagcccagggatg
ccgggtaaagatggagaagaagggcccgctggtcagccaggagcaaaaggggatccgggt
tccccaggacaaccaggagttccaggacttccagggctaaaaggagcgatgggcgaaatg
ggttacccaggtacacccggcgaaaaaggtgtgcctggagttccaggcccaccaggccag
ccaggatttacagggttaaaaggtgataaagggataaaaggagaaactggtttccctggc
atcggactcccaggatttcctggagaaaaaggtgagccaggtagagtaggtgtacagggt
gttcctggagagaaaggtgacaaaggtgacactggaatgcccgggatgcatggctcacca
ggccccaaaggatttcctggttctcctggctatccaggcaacccaggtacaccaggggaa
aaaggagtggaaggacttcctggcatcaatggtatcccaggatctaaaggggagcaaggt
gggccgggtcagccaggactacctggtaccattggtgaaaaaggtgagcctggttatgat
ggaattccagggacacccggtgacaagggagatccaggttttccaggccgtggtcttcca
gggctttcaggtgcaaaaggagaaaaaggtttcaaaggagacagtggtgtcccaggattc
ccaggaataagtggactccctggcagcaaaggggataaaggactttctggtgctcaaggt
cctgagggccgacaaggatttcctggactgcccggctcggcgatagagggaccgaaagga
gcaagaggaccacagggtcaaccaggacttgcaggtccacctggtcaggagggaccgcct
ggtcctgctggaatacacggatccaaaggagataaaggtgactctgggtggcctgggaca
cctggctatccaggaattaaaggagaaaaaggatatcaaggatttactggtgaacctgga
acaccaggaaatgctggacagaaaggagatgcaggccccccgggtgttccaggatttgaa
ggatctaaaggctttcccgggccaggtggcttcaagggagaacatggagatcaaggtgta
cctggcccaaaaggtttgcaaggaccacctgggcctccaggtccttttcagagtgttaaa
ggtgaacctggtacacctggcctacctggtccagcggggcccaaaggactgcctggttac
cctggccctaaaggacagcaaggtgtaacaggattggtaggtttacccggagagagtggt
gctcctggttttgacggtacacccggtccaaagggagaaactggtccctctggtccccca
ggcccaagaggatatccaggacccccaggccctgacggtttaccaggacctattggtagc
ccaggtccaccatctatggctcatggcttcctcgtgaccagacacagccaaaccacagaa
gaacctctgtgccccttcggaatgagaatgatctattctggatactctctgctctatgtg
cagggcaatgagaggtcacatggccaagacttgggtactgctgggagctgtcttcgcaag
ttcagcacaatgccattcctgttttgtaacatcaacaacgtgtgcaactttgcctcaaga
aatgactattcctattggttatctactccagagcctatgccaatgagtatggcgcccatc
actggtgaaagcataaagcctttcatcagcaggtgctcagtctgtgaagctccagccatg
gtcatggcagttcacagccaaaccatacagataccatcgtgcccagaagggtggctctcc
ctgtggattggctactcgttcgtcatgcaaacaagtgctggtgctgaggggtctggacaa
gccctggcgtcgcctggatcctgtctagaagagttccggagcgtaccattcattgagtgc
catggccggggaacatgcaattactatgcaaatgcttacagtttctggcttgccaccatt
gaacgatccgacatgttcaagaaacctaccccgtctactctgaaagcaggggacctgcgc
acacatatcagccgctgccaagtctgcatgcgaaggatatag

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