Pleurodeles waltl (Iberian ribbed newt): 138259318
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Entry
138259318 CDS
T10800
Name
(RefSeq) transcription elongation factor SPT5 isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
138259318
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pwl03021
]
138259318
03019 Messenger RNA biogenesis [BR:
pwl03019
]
138259318
Transcription machinery [BR:
pwl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
138259318
RNA polymerase I system
138259318
Messenger RNA biogenesis [BR:
pwl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
138259318
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW4_SPT5
KOW
KOW7_SPT5
KOW2_Spt5
KOW5_SPT5
Spt5-NGN
KOW6_SPT5
KOWx_SPT5
Spt5_N
KOW1_SPT5
GPKOW_C
DUF3912
Ribonuc_P_40
Motif
Other DBs
NCBI-GeneID:
138259318
NCBI-ProteinID:
XP_069063051
LinkDB
All DBs
Position
9:372033449..372410947
Genome browser
AA seq
1121 aa
AA seq
DB search
MSDSEDSNFSEEESEQSSEPEDAEENEPEAEEEPRVSPAGSDKADEEEAEENDDEAEEAD
EAEEADEAEEGDEPEEGAEEAEEEDDYDEEDEEDDDNDRPRKKPRHGGFILDEADVDDEY
DDDEDQWDGETEQIIGKGENTSSASNIDNAMVNEDRSGARRLQNVWRDQREEELADYYMK
KYAKSSAGEHVLGGSDELSDDITQQQLLPGVKDPNLWTVKCRIGEERATAFLLMRKYIAY
QFTDTPLQIKAVVAPEHVKGYIYIEAYKQTHVKQAIEGVGNLRMGFWNQQMVPIKEMTDV
LKVVKEVSSLKPKSWVRLKRGIYKDDIAQVDYVEPSQNTISLKMIPRIDYERIKAHATMK
DWFSKRKKFKRPPQRLFDAEKIRSLGGEVTSDGDFLIFEVNRYSRKGFLFKSFAMSAVIT
EGVKPTLSELEKFEDQPEGIDLEVVTETTGKEREHTLQPGDNVEVCEGELINLQGKILSV
DGNKITIMPKHEDLKDILEFPAQELRKYFKMGDHVKVIAGRYEGDTGLIVRVEENFVILF
SDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELVQLDPQTVGVIVRLERETFQILNM
HGKVVTTKHQAVTRKKDNRFAVALDSEQNNIHVKDIVKVIDGPHSGREGEIRHLFRGFAF
LHCKKLVENGGMFVCKTRHVVLAGGSKPRDVTNLTIGGFAPMSPRISSPMHPSGAAGPRG
GAAAGAGMGRGRGRRDSDLIGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQTISVD
RQRLTTVGARRPGGMTSTHGRTPMYGSQTPMYASGSRTPMYSSQTPVHDGSRTPHYGSQT
PLHDGSRTPAQSGAWDPNNPNTPSRAEAEEYEFAFDDEPSPSPTGYVGTPNPQTPGYPDV
PSPPVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQGSYQPSPSPQSYHQVAPSPVGYPNTH
SPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSPGAYNPHTPGSSIEQSTSEWVTTDIQ
VKVRDTYVDNQVVGQCGVIRSVTGGLCSVFLQDGEKVVSISGEHLEPVTPSKNNKVKVIL
GEDREATGVLLSIDGEDGIVRMELDEQLKILNLRFLGKLEA
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacagcgaggacagtaacttttctgaggaggaaagtgagcagagtagtgagcca
gaggacgcagaggagaatgagccagaggcagaggaggaaccgcgagtgagccctgctggc
agtgacaaagcagatgaagaggaagctgaggaaaatgacgatgaagcagaagaggctgat
gaagcagaagaggctgatgaagctgaagagggagatgagccagaggagggtgccgaagaa
gctgaggaagaggatgattatgatgaagaggacgaggaggatgatgacaatgaccgacca
cgaaaaaaacctcggcatggaggatttatcttggatgaagccgatgtggatgatgagtat
gacgatgacgaagatcagtgggatggcgagacggagcagattatcggcaaaggtgagaac
acctcatctgcctccaacattgataatgccatggtgaatgaggatcggtccggggctcgc
aggctgcagaatgtatggagggaccaacgggaagaggagctggcagattattacatgaag
aaatatgcaaagtcctcagcaggagaacatgtccttggtggatcggacgaactgtctgat
gacatcacccagcagcagttactgcccggagtcaaagatcctaacctttggacagtaaaa
tgtaggatcggggaagaacgtgcaacagcttttttgttgatgaggaagtatatcgcctac
cagtttactgacacgcccctccaaatcaaggctgtggtagcacctgagcatgtgaaggga
tacatctacatagaggcttataaacagacccacgtgaagcaggcaattgagggagtggga
aacctgaggatgggcttctggaaccagcagatggtgcctatcaaggaaatgacagatgta
ttgaaggtggtgaaggaggtatccagtctaaagccaaagtcctgggtgagactaaaacgt
ggaatctacaaagatgacattgcccaggtggattatgtggagccaagccagaacacaatc
tccctgaaaatgattcctaggatcgactatgagaggatcaaagctcatgctaccatgaaa
gactggttttccaaaaggaagaagttcaagaggcctcctcaaaggctctttgatgctgaa
aaaattaggtccctaggtggagaggtcacctccgatggagatttccttatctttgaggtc
aatcgttacagccgcaaaggcttcttgttcaagagctttgccatgtctgctgttatcact
gaaggagttaagcctaccctatctgagctggagaaatttgaagaccaacctgaaggaatt
gatttggaggttgtaacggaaaccacagggaaggaacgtgaacacacactgcagcccgga
gacaatgtagaagtctgtgaaggagaattgatcaatctccagggtaaaattttaagtgtg
gacggcaataagattaccatcatgcccaagcatgaggacctgaaggatatcctggagttt
ccagcccaagagttgcggaagtacttcaaaatgggagaccatgtgaaagtgatcgctggg
cgctatgagggggacacagggcttattgtgcgagtggaggaaaactttgtcatcctgttt
tcagatctcactatgcatgagctgaaggtactacctcgggacttgcaattgtgttcggag
accgcatctggggtggacgtcggtggtcagcatgagtggggggagttggtgcagcttgac
cctcagactgtgggggtgattgttcgtctggagagagagacttttcagattctgaatatg
catgggaaagtggtcacaacaaagcaccaggctgtgaccaggaagaaggacaaccggttt
gctgtggccctggattctgagcagaacaacatccatgtcaaagatattgtgaaagtcata
gacggacctcattcggggcgtgagggggagattcggcacttgttccggggctttgcattc
ctgcactgtaagaaacttgtggaaaatggaggcatgtttgtctgtaaaacgcgccacgtt
gttctggctggaggctccaagcctcgggatgtcacaaacctcacaataggaggatttgca
ccaatgagtcctcgtattagtagtcctatgcatcctagcggggcagcaggaccaagaggc
ggtgcagctgcgggagctggaatgggacgaggtcgtggacgtagagatagtgatctgatt
gggcaaactgtgcgcatctctcaaggaccctacaaagggtacattggagtcgtaaaggat
gccactgaatccacagctcgagttgagctccactccacctgtcagactatctcagtagat
cgtcagcgtctcaccacagtcggtgctagacgtccaggtggaatgacatccacgcacggc
cgtacacccatgtatggctcccaaacacccatgtatgcctccggatccagaacacccatg
tacagctcacagacacctgttcatgatggaagccggacacctcactatggttcacagacg
cctctccatgatggcagccggacgccagcacaaagtggagcctgggatccgaacaaccct
aacacaccctccagggctgaggcagaagaatatgagtttgcttttgacgacgaaccctca
ccttctccgactggatatgttgggacaccaaatccacagacaccaggctatccagatgtg
ccatccccaccggttaatccacagtacaaccctcaaacaccaggcacgccagcgatgtac
aatacagaccagttctccccgtatgctgcaccatctccgcagggttcctaccagccaagt
ccaagtccacagagttaccaccaagtggcaccaagtcctgttggctacccaaatacccac
tcgcctgccagctatcatccaaccccctcacccatggcatatcaggctagtcccagtccg
agtccagtagggtacagtcctatgacacccggtgccccatctccaggcgcatataaccca
cacactcccggctcatccatcgagcaaagcaccagcgagtgggtaacaactgacattcag
gtcaaagttcgagacacctatgtggacaaccaagtggtcgggcagtgtggtgtaattcgc
agtgtgacaggtggattgtgctcggttttcctgcaggatggtgagaaggttgtaagtatt
tctggggagcacctggaaccagttaccccatccaagaacaataaggtgaaagtaattttg
ggagaggaccgagaagctactggggtgctccttagtattgatggagaagatggaattgtc
cggatggaactggatgaacagcttaaaatcctcaacctgaggttcctgggcaaattggaa
gcatag
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