Pleurodeles waltl (Iberian ribbed newt): 138259796
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Entry
138259796 CDS
T10800
Name
(RefSeq) homeobox protein SIX5-like
KO
K19474
homeobox protein SIX5
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pwl03000
]
138259796
Transcription factors [BR:
pwl03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain SINE
138259796
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SIX1_SD
Homeodomain
Homeobox_KN
Motif
Other DBs
NCBI-GeneID:
138259796
NCBI-ProteinID:
XP_069063788
LinkDB
All DBs
Position
9:640128549..640222942
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AA seq
970 aa
AA seq
DB search
MASFPAPEPGSPQPSEESPLSAEEGLLDPGEQTPSSPGPLGFSPEQVSCVCEALLQAGDG
QRLAGFLRSLPADGPGGEALLRARALVAFEAGDYPSLYQIVQSRPFPAEHHGFLQDLYLR
ARYREAEVARGRPLGAVDKYRLRKKFPLPSTIWDGEETVYCFKERARRALRERYRRDRYP
APDEKRRLARETGLSLTQVSNWFKNRRQRDRTGTGKSESDGNHSTEDESSQGPEDMEVGG
STGQDGAPLPDNFFLAANTSCSTASSILLNGNFITTSPQPIIVNGGSVIQTPNGVIINGL
ALGDGQSITLSPVGTNPPILFNGATVLGGTRPQLKQESGLPQDTLSTVLLNTSSSTNLQQ
LQCRADIKVEHGEDSLPSLVFARNGPIALQVPQTSQAGPAEVKSEGCQTTTSQVLHQSET
GQSSHQILSVTQLHQTQPLTSDPKTSHVPQLLSAPQVVPSGDTATVAQVASMAQVIQAQP
MVSDSQIIPISAVVSNTQSGQLAHTFQPSQAGITQPVSPSIQTAPFPYVLQGSALVSFPA
ANHLTSSVETMPATSIPAVVTIPSEVGTSPPLLPLSQASLTPQVVPLSQPGQGTHMLSPS
QMVPLSPVVTPSQVYSVPQMATSAQPLLPIPQMPQGSPLVSLPSLPQVVPSSQMLTFQQG
TGSFQILTNNSPVKLNQAGSPPFVNSPLNQGNIHLINTSMGMAAVQLPAAATGNYLLSSP
VTGNTILALQQGKLLFTATFPASMLMPSPVSGGMALPIKQEALESNGQIMVPVTTVNAGS
TAGASVLPCSIVSSGVSSMPSPSSGVVVAPAPMNSDGPLSDAMNQPAVAFEADQSGSTAD
PIHNNINTSMGTLTQSSFLSNGPLEGMVLPSFSPQQLVWSGSLCGQNTTGIQVQGVESSS
LFEMEKGAVQMLDGMENSNLLRLADGESLMLPGCGESHQHLSGEDSDEMTREGKVLTQLQ
SVPVEDPLDM
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atggcttccttccccgctccggagcccgggagtccacagccgtcggaagagtctccgctg
tcggcggaggagggcctgctggatcccggggagcagacaccctcctccccgggacccctg
ggattctcccccgagcaggtctcatgtgtgtgcgaggcactgctgcaggccggggacggg
cagcgtctggccggtttcctgcgttcactgcccgcggatggcccgggcggggaggctctt
ctacgggctcgagccctggtggccttcgaggccggggactacccttctctgtaccaaata
gtgcagagccgaccgttccctgcagagcaccacggcttcctgcaggacttatacctgcgc
gcccgctaccgggaagccgaggtggcgcggggccggccgctgggcgccgtggacaagtac
cggctgcgcaagaagttccctctgcccagcaccatctgggacggcgaggagacggtatac
tgctttaaggagcgggcccgccgcgccctacgggagcgctatcggcgcgatcgctacccc
gctcccgacgagaagcgcagactggccagggagactggcctctccctcacccaggtcagc
aactggttcaagaaccgcaggcagcgcgaccgcaccgggaccggcaaaagcgagtctgat
ggaaatcacagcacagaagatgagtcaagccaggggcctgaggatatggaggttggagga
tcgactggtcaagatggggctcctcttcctgacaacttcttcctggcagccaatacgtcc
tgctctactgcctcttccatcctcctaaatggcaatttcatcactaccagccctcagccc
atcattgtgaacgggggatctgtcatccagacacctaatggggttatcatcaatggtttg
gctctaggagatggccagtccattaccctgagcccagtgggcaccaaccctcccatcctg
ttcaacggagccaccgtccttggtggcacccgcccacaattaaagcaggagtcaggcttg
ccacaggacactctttctacagttttgctgaacacaagcagttccaccaatctgcagcag
ctacagtgtcgtgcagacattaaagtagaacacggggaagactcgttgccctccttggtg
tttgccagaaatggccctatagccctccaggttccacaaaccagccaagctgggccagca
gaggttaagtcagaaggatgccagaccacaacctctcaagtcctccatcagtctgagact
ggtcagagctcccatcagatcttgtctgtcacccagctgcaccaaacacaaccactcacc
tctgatccaaagacatctcacgttcctcagttattgtctgctcctcaagtggtcccatca
ggagatacggccactgtggctcaagtggcttccatggctcaagtcatccaggcacaacct
atggtttctgattcccagattattcctatttccgcagttgtgtctaacactcagtctggt
cagctagctcacacttttcagccatctcaggctggcataacacaacctgtgtcccctagc
atccaaacagcaccttttccctatgtcctccagggttctgcattagtctcctttcccgca
gccaatcacctgacatcttccgttgagacaatgccagcaacttcaatacctgctgttgtc
accattccttcagaagttgggacatcaccaccactccttcccctttcccaagcttccttg
accccccaggtggtcccactgtctcagcctggtcaaggcacacacatgctctctccatcc
cagatggtcccgctttccccagttgtcactccctctcaagtttactcagtcccccaaatg
gccacatcagcccagccgttgcttcccatacctcagatgccacaagggtctccgttagtt
tcactcccctcactccctcaggttgtcccctcatcccaaatgttgactttccagcaaggc
acaggatcatttcagatcctgactaacaactcccctgtgaaactcaatcaagctggctca
ccaccttttgtcaattcccctctcaaccagggaaatattcacttgatcaacacaagcatg
ggaatggcagcagtgcagctccctgctgcagctactggaaattacctcctgtcaagtccg
gtgactggaaacaccattctcgcactgcaacagggaaagctccttttcacagccaccttc
cctgccagcatgctgatgccctcgccggtctctggtggcatggctcttccaatcaagcaa
gaagccctggagtctaatggacaaatcatggtgccagtcaccacagtgaatgctgggagc
acagcaggtgcttctgtgttgccttgctccattgtcagctcaggtgtctcttctatgcct
tcaccatccagcggagtggtggtagcccccgctcccatgaactccgatggacctttaagt
gatgcaatgaaccagccagctgtagcatttgaagctgaccagtctggtagcactgctgac
cccatccacaacaatataaacactagcatggggaccctgacacagagcagtttcctctcc
aatggccccctggagggcatggttctcccttccttctcaccacagcagttggtgtggtct
ggatccctgtgtggacaaaacacaacaggaatccaggtgcaaggggtagaatcaagcagc
ctgtttgagatggaaaagggtgctgttcagatgctggatggaatggagaacagtaacctc
ctacgccttgctgatggggagagtctaatgcttcctggctgtggggaaagccaccagcac
ctttctggggaggactctgatgagatgacccgtgaaggaaaagtcctgacacaactacag
tctgtgcctgttgaggaccccttggatatgtaa
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