Pleurodeles waltl (Iberian ribbed newt): 138259979
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Entry
138259979 CDS
T10800
Symbol
SF1
Name
(RefSeq) splicing factor 1 isoform X1
KO
K13095
splicing factor 1
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138259979 (SF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pwl03041
]
138259979 (SF1)
Spliceosome [BR:
pwl03041
]
Complex A
Other components
Complex A specific factors
138259979 (SF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF1-HH
KH-I_KHDC4-BBP
KH_1
zf-CCHC
KH_12
zf-CCHC_5
Prion_octapep
zf-CCHC_3
KH_NusA_1st
Motif
Other DBs
NCBI-GeneID:
138259979
NCBI-ProteinID:
XP_069064108
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All DBs
Position
9:complement(790749050..790932772)
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AA seq
799 aa
AA seq
DB search
MATGANATPMGKLHPSIGAKRGYEQGLAGFQPPLPQSSAAPLAYHLIPPQAFLLPPPPPP
PLPQPQASHSHLHQPPPPPPSSSVPQKHQAQPPPSKSQSSSRAAFQQPFKSSHPQSPPPR
ASSGRAASPAGGGGGGGADFSRKRKRSRWNNDIVDQKTIIPGMPTVIPPGLTRDQERAYI
VQLQIEDLTRKLRTGDLGIPPNPEDRSPSPEPIYNSEGKRLNTREFRTRKKLEEERHNLI
TEMVALNPDFKPPADYKPPATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNA
KIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGIETP
EDQNDLRKMQLRELARLNGTLREDDNRILRPWQSTEPRSITNTTLCTKCGGAGHIASDCK
FARPGDPQSAQDKARMDKEYLSLMAELGEAPVPSSLSSIGSSMGSSIGGSMGSSIGGSMG
SSIGGSMGSSIGSMASICSSMGSSIGSSMGSSIGSSMGSSIGSSMGSIGSSISSSMGSSI
GSSSGASHSPISRNSGTVNSQAPQNRPPWMNSAPSESRPYGMQSSSTNPGGHSGQHSFSH
PMPSIGGHQSSQNPSGPLPPWMQPPPLPMNQAPHQSGHHQMGMMHPTHMGMLPPPPPPPP
PGGQTPSGPLPPWQQQQQAPPPNSMSSNAPLPWQNTTSTSTVTTSIPPWQQQPGSTAAST
SASQMPGNLPIVPPGIQPPLPSVVPPSLPPPPPGTTGMMYATPPPPPPPPADHPNFVTMM
GIGIPQFGMPAPPPPPPQN
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccggagccaacgccacaccgatgggtaagctgcacccttccatcggcgccaag
cggggctacgagcagggtctggcgggctttcagccccctctccctcagtcctcggctgcc
cccctggcctaccaccttatacctccccaggccttcctcctgccgcccccaccacctccc
cctttgccgcagcctcaggcctcacactcacacttgcaccaaccaccgcctcctcccccc
tcctcttcggttccgcagaagcaccaggcccagccgccgccttcaaaatcccagtcgagt
tctcgagcagcctttcaacagcccttcaagtcttcgcatccacagtcaccgccgccacga
gcatcgtcgggtcgggccgcatcaccagcaggagggggtggaggaggaggagctgatttc
tccaggaagcgtaagagaagccgctggaacaatgatattgttgaccagaaaaccatcatc
cctgggatgcccacggtcataccgccgggtcttactcgggaccaagagagagcttatata
gtacaactgcagattgaagacctgactcgtaaactgcgcacaggagacctggggatcccc
cctaaccctgaggacaggtctccatctccagagccaatctacaatagcgaggggaaacga
ttgaatactcgtgagtttcgaacacggaaaaaactggaggaagaaagacataatctgatc
acagaaatggtggcccttaatccagatttcaaaccgcctgcagattacaaacctccagca
acgcgagtgagtgacaaggtgatgattccacaagacgaatacccagaaataaactttgtc
ggacttctcattggaccaaggggcaatacgctgaagaacattgagaaggagtgtaatgcc
aagatcatgattagaggcaaagggtcagttaaagaaggaaaggtgggaaggaaagatgga
caaatgcttccaggtgaagatgagcctttgcatgctctagttactgccaacacaatggag
aatgtgaagaaagctgtagaacagattcgtaatatcctaaaacagggcattgagactcca
gaggatcaaaatgacctacggaagatgcagctgcgagagttggctcgtctgaatggcaca
cttcgtgaggatgacaacaggatcctgaggccgtggcagagcactgaacctcgcagtatt
accaatacaacactttgcactaagtgtggcggagcagggcacattgcatcagattgcaag
tttgcaagaccaggagatccccagtcggcccaggataaggcacgcatggataaagaatac
ttgtctctgatggcagagctgggtgaagctcctgttccatcctcgttgagttctataggt
tcttcaatgggctcctccattggtggttcaatgggctcctccattggtggttcaatgggc
tcctccattggtggttcaatgggctcctccattggttcaatggcctccatttgttcttca
atgggctcctccatcggttcttcaatgggctcctccatcggttcttcaatgggctcctcc
atcggttcttcaatgggatccatcggttcttcaataagttcatccatgggatcatccatt
ggctcgtcttcaggagcctcgcactctcccatttcaaggaactctggaacagtaaacagc
caggctcctcaaaatcgcccaccatggatgaactctgcaccctccgaaagcaggccatat
ggaatgcagagcagcagtacgaacccgggaggccacagtggacagcacagttttagtcat
cccatgcccagtataggagggcaccagtcctctcaaaacccaagtggaccacttccacct
tggatgcagccccctccgctaccgatgaatcaagctccacaccagtctggccatcatcag
atggggatgatgcatcctactcacatgggaatgctgccaccgccacctcccccacctcca
cctggtggacagacaccttcagggccattgcctccctggcaacagcaacaacaagctcca
ccccccaacagtatgtcctccaatgcaccgttaccatggcaaaacaccactagcacatcc
acagtaaccacatccattccaccatggcagcagcaaccaggatccactgcagcctccact
tctgcatctcagatgccaggaaatctgcccatagtacctcctgggattcaacctcccctg
ccatcagttgtgccaccttctctgccgccacccccacctggcaccacaggcatgatgtat
gcaacgcctccaccacctccgccaccaccagccgaccatccaaactttgtcaccatgatg
ggaataggtatacctcagtttggaatgcctgctccaccacctccaccaccgcaaaactag
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