Pleurodeles waltl (Iberian ribbed newt): 138260016
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Entry
138260016 CDS
T10800
Symbol
SYVN1
Name
(RefSeq) E3 ubiquitin-protein ligase synoviolin
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl04120
Ubiquitin mediated proteolysis
pwl04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
138260016 (SYVN1)
04120 Ubiquitin mediated proteolysis
138260016 (SYVN1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pwl04121
]
138260016 (SYVN1)
Enzymes [BR:
pwl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
138260016 (SYVN1)
Ubiquitin system [BR:
pwl04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
138260016 (SYVN1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-C3HC4
zf-rbx1
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-RING_16
zf-RING_11
zf-RING_5
zf-ANAPC11
zf-RING-like
FANCL_C
Motif
Other DBs
NCBI-GeneID:
138260016
NCBI-ProteinID:
XP_069064179
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All DBs
Position
9:811120517..811358768
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AA seq
612 aa
AA seq
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MLRVAVMIGASLALTSAVVAHAFYLKHQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKV
MGKVFFGQLRLAEMEHLLERSWYAVTETCLAFTVFRDDFSPRFVALFTLLLFLKCFHWLA
EDRVDYMERSPNISWLFHIRIISLVLLLEVLDFLFVRHAYYSILARGASVQLVFGFEYAI
LMTMILTVFIKYMLHSVDLLFENPWDNKAVYMLYTELFTGFIKVLLYMAFMTIMIKVHTF
PLFAIRPMYLAMRQFKKAVTDAIMSRRAIRNMNTLYPDATPEELQAVDNICIICRDEMVT
GAKRLPCSHIFHTSCLRSWFQRQQTCPTCRMDVLHATVPTQSQQAPEQQEQAPQPPIPQA
PHFPQGMLPPFPPGMFPMWPPMGPFPPVPGVQVPNNPPDADSATAAPTTAASTLRAGDAA
GANTWTMDGTTAASVPGFPFPPPWMSMPMPPPFGFPPMPVPPAGFAGLTDDELHAMEGHE
RQNLEARLQCLQNIHTLLDAAMLQINQYLTVLATIGPPRPAPAPAAPPSPTSATVSTSNT
TVSSTDNVTPSTSAAVEDLASLDHTETSEILGAEGYTPLTVEDDTFSHEEPDAAELRRRR
LQKLASPPSDSH
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgctacgcgtcgcagtcatgattggtgccagcctggcactgacgtcggctgtggtggcc
cacgctttctacctgaaacatcagttctatcccacggtcgtgtacctcaccaagtccagt
cccagtatggcagtcctctacatccaggcatttgttctggtttttctccttgggaaagtc
atgggcaaagtgtttttcggacagctgaggttggcagagatggagcacctgttggagcgt
tcctggtatgcagtgacagagacctgccttgcattcactgtcttccgtgatgatttcagc
ccccgctttgttgcgctgttcaccctcctcctttttctcaagtgcttccattggttggct
gaggaccgagttgattacatggagagaagtcctaacatctcttggctgtttcacatacga
attatatctcttgtgctccttctggaggtgctagactttctttttgtcagacatgcctat
tacagcatcctcgcccgaggagcctctgtccagctggtctttggctttgagtatgctatc
ctgatgaccatgatcctcactgtatttataaagtacatgctgcactcggtagacctgctg
tttgagaacccctgggacaacaaggctgtctatatgctatacactgaactcttcacaggg
tttataaaagtgctgctgtatatggcattcatgaccatcatgattaaagttcacaccttc
cctctgtttgccatcaggcctatgtacctagcaatgaggcagtttaagaaggctgtgacg
gacgcaattatgtcaaggagagccatacgcaacatgaacacactgtaccccgatgccacc
ccagaggagcttcaggctgttgacaacatctgcatcatctgtcgagatgagatggtaaca
ggagccaagcgtctaccttgcagccacatatttcataccagctgcttacgctcttggttc
cagcgtcagcaaacttgccccacctgccgcatggatgtcctccacgctactgtccctacc
caatctcagcaagcgccggagcagcaggagcaagctccacaaccaccgataccccaggca
ccccattttccccaaggaatgcttcctccatttcctcctggcatgtttccaatgtggcct
ccaatgggaccttttccgccagttcccggtgtccaagttcccaacaacccaccagatgcc
gattctgccacagctgcacccactactgcagctagtacattaagagctggcgatgccgca
ggagcaaacacatggacaatggatggaacaactgctgcctccgttccaggctttcctttc
ccacctccttggatgagtatgccaatgccccctccctttggattcccacccatgccagtg
cctccggcaggttttgctggcctgacagatgatgagcttcatgccatggagggacatgag
cgacaaaatttggaagcacgtctgcagtgcctgcaaaacatccacacgttgctggatgct
gctatgctacagatcaatcagtaccttacagttctagcaactattgggcctccacgtcca
gcccctgcaccggccgctcctcctagccctacatcagctactgtgtctaccagcaatact
accgtttcgagtacagataacgtaaccccatccacctctgccgcagttgaggacttggcc
tctttggaccatacagaaaccagtgaaattctgggtgctgaaggatacaccccactgact
gtagaagacgacaccttttctcatgaagaacctgatgctgctgaacttcgccgacgaaga
cttcaaaaactggcttcgcctccgtctgactcccactga
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