Pleurodeles waltl (Iberian ribbed newt): 138261010
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Entry
138261010 CDS
T10800
Symbol
HDAC6
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pwl01009
]
138261010 (HDAC6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pwl03019
]
138261010 (HDAC6)
04131 Membrane trafficking [BR:
pwl04131
]
138261010 (HDAC6)
03036 Chromosome and associated proteins [BR:
pwl03036
]
138261010 (HDAC6)
Enzymes [BR:
pwl01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
138261010 (HDAC6)
Protein phosphatases and associated proteins [BR:
pwl01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
138261010 (HDAC6)
Messenger RNA biogenesis [BR:
pwl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
138261010 (HDAC6)
Membrane trafficking [BR:
pwl04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
138261010 (HDAC6)
Chromosome and associated proteins [BR:
pwl03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
138261010 (HDAC6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
DUF6761
Motif
Other DBs
NCBI-GeneID:
138261010
NCBI-ProteinID:
XP_069065704
LinkDB
All DBs
Position
10:37294905..37517334
Genome browser
AA seq
1678 aa
AA seq
DB search
MCSMVPRPPNHLLNPQLFHPPSDCNLLYIRALILKKKSHHAENRSATCKTLQHHCRGSLA
STGEYPSCRMPSPPSQAQPGPRSIRGSSRSPLLSAAASGGHSQKKAPKKGGQPASNPQQR
SQNLQEARKKGKMKLNRSTDEDIVAQLQRLDLRRAEAVFSGTALVCDETLTDFHCLWDKD
FPECPARLTAVKEKLVKYGLMQRCIQLQAQEASDDEILLVHSPEYLKQMKSTQNMTVEEL
RALSDSYDSIYLHPKSYHSACLAAGSVLQLVDKVFAGEARNGMAVVRPPGHHAHWGKMNG
YCMFNNLAMAARYAQRNHGASRILIVDWDVHHGQGTQYMFEDDPSVLYFSIHRYEQGHFW
PHLPESDSHAVGEGRGEGFTINVPWNKTGMGDADYIAAFLHLLLPIALEFQPHLVLVAAG
FDSVIGDPKGEMLASPACFAHLTHLLMPLAGGKLILALEGGYNLRSLAEGSCSALKILLG
DPCPRLTSPVIPCQSALASISEAIAAHYKYWKSLRHYGEVDQTEEESEESKPEALPTSQE
LNVILDTTMAEVMRVLPPQRTGLVYDDRMMEHANAWDSHHPELPQRISRIYERHMELRLV
ERCCRLPARHASDDELMMCHSSEYIQTIRSTADMKPRDLHRLGSEYNSIFINPKSYDCAR
LAAGCSFSAIEAVMTGKVQNAVAIVRPPGHHAERGNACGFCFFNTAALAARYAQRIAGRQ
LKVMILDWDVHHGNGTQHIFEDDPSVLYVSLHRYDNATFFPASTDADYNNVGHGSGAGFN
VNIAWNNSKMGDAEYIMAFHRAVIPIAYEFNPDLVVVSAGFDAARGDPLGGCLVTPEGYA
HMTHLLMGLAGGKIVVVLEGGYNLSSISESMTMCTRTLLGDTLPDLGKLRAPQRSAQQSV
TNTVWVHKKYWKSLQLHVPEFVITCEEVTRDKPVTPSKSRGNTPKPSTPTRHGSSSTGQT
VTPVGTKMSNHQKEEENPRILTPTFGKPMKPIRIGSGHEVIEAEVSRASVSSSRRSETPL
MVETDQTVEEAVEMRVQVTQVEKLDSPGGIKNSHDTQQVETLRGPLPTSDKPEAPMVVEN
DHEEDKSGQAYVSVSPSEKQMHTVRIKKDHEPDKTVQAGNPMSPMEKKELPVVNGNVFEL
ETMLESKDLSLPQSSEILTMQENLHDSINEVPLVPILSPAELEIPKERLKDPEEEASNHV
GTGSLVVELSKLILQQSVPLVGECADSEERVTDDPRTLKSHTDVVGYAQGSTPETPVCQS
VTMEPVTPRENSTIVEAAFLSQQPCRFVADLGEEKMSIKELSVDNSNMCLPVGENMTAQD
SSKDQNEILSINMEVLRLPAVEPAPVTVYNLDKVILNDGRGDTLVNGKCSTGDKSYDQNP
AGHTPPLCACESPTSIPVGGARRKVKPCMVSSDFSTIASACSVTVASSSSPTLSNPTYIA
AALPGSQGQTFSTASTKLTSTSPLAPSPSSRSLAQSTMLQESSTAGSAIHTETVMGLEGS
DEEHVVDISLSLQVLDIEGHSQKETPETCISSSPKKEELLEEATGWTNPFNSRPLCKRFG
NCPEEEQSMLYAVTPLPWCPHLESVQSVPECGLNVTEACQECSSSVENWVCLVCYKVYCG
RYINEHMLMHGLDSGHMVVLSYADLSVWCYSCESYIHNEALLEAKNVAHRMKFGEDVA
NT seq
5037 nt
NT seq
+upstream
nt +downstream
nt
atgtgctccatggttccacggccccctaaccacttgctgaaccctcagctctttcaccct
ccttcagactgcaacctcctgtatatcagagctctcatcctaaaaaaaaaaagccatcat
gcagagaacagatcagccacctgtaaaacccttcaacaccactgcagaggatctctggcg
tcaacaggagagtaccccagctgcagaatgccgtccccacccagtcaggcacagcctggt
ccacgcagcattcgtggcagctcccggtcccccttgctgtcagctgctgcttctggtggc
cattctcagaaaaaggcaccaaagaagggaggccaacctgcttccaacccgcagcagagg
agccagaatctgcaggaggccaggaagaagggcaagatgaaactgaacaggagtactgat
gaggatattgtggcgcaacttcagagattggacttgcgccgagctgaggctgtcttcagc
ggtacggctttggtgtgtgacgagacgttaactgatttccactgtctctgggacaaagac
ttccccgaatgcccagcaaggctgaccgctgtgaaggagaagcttgtcaaatatggcctg
atgcagcgatgcattcagttgcaagcccaggaggctagtgatgatgagatccttctggtt
cacagcccggaatacctgaaacagatgaagtctacgcagaacatgacagtggaagagctg
cgggccttgtcagatagctatgactccatctacctgcacccaaagtcttatcacagtgcc
tgcctggctgcaggatctgttctgcagctggttgataaggtgtttgcaggggaggctcgg
aatggaatggcagtagtgagacctccggggcatcatgcacattggggaaagatgaacggt
tattgtatgttcaacaaccttgccatggctgcccggtatgcccagcgaaatcatggagct
tcgcggattcttattgtagactgggatgttcaccatggtcagggcacacagtacatgttt
gaagatgacccaagtgtactttacttctccattcaccggtacgaacagggacacttttgg
cctcatttgcctgagtcagacagtcatgctgtgggggaaggacgaggtgaaggcttcaca
atcaacgttccatggaacaagactggtatgggtgatgcagattacattgctgctttcctt
cacctcctcctgcccattgcccttgagtttcagcctcatctggtgcttgttgcagctggt
tttgactctgtaattggcgatcccaagggtgagatgttggcctccccggcatgctttgct
catcttacgcacctactgatgccgctggctggtggaaagctcatcctggctctggagggt
ggttacaaccttcggtcgctggcggaagggtcatgctcagccctgaagattctgctgggc
gacccttgtcccaggcttacttcgcccgtcatcccatgtcaaagtgccttggcatccatt
tcagaggccattgcagcgcattacaagtactggaaaagcctgcgtcactatggtgaagtg
gatcagactgaggaggagtcagaggagtcgaaaccagaagcccttcccacatcccaagag
ctaaatgttatcctggacacaaccatggctgaagtcatgcgagtgctcccaccacagagg
acaggactggtatatgatgatagaatgatggaacatgccaacgcctgggacagccatcac
cctgagctgccacagaggatctcgcgcatttatgagcgacatatggagctgcgactggtg
gagcgctgctgcaggttgcccgctagacatgcctctgatgatgaactgatgatgtgccac
agctcagaatacatccagactatccgatccacagctgatatgaagcctcgggacctgcac
cgtctgggcagcgagtacaattccatattcattaatccaaaatcctatgattgtgcccgc
cttgcagcaggctgttccttcagtgccatagaagctgtgatgacgggcaaggtgcagaat
gcagtggcaattgttcgaccgccaggacaccatgcagagagaggcaatgcatgtggtttc
tgcttcttcaatactgcggcgctggctgcaagatatgcacagaggatagctggacgacaa
ctcaaggttatgattctagactgggatgtccaccacggcaacggaacacagcacatcttt
gaagacgacccaagcgtgctgtatgtttctctccaccgctatgacaatgctacattcttc
cctgcctccaccgatgcagattataacaatgtgggacatgggagtggagcagggttcaac
gtcaatattgcatggaataacagcaaaatgggagatgcagagtacataatggcatttcac
cgtgctgtgatacctatcgcctatgagttcaatccagatctggttgtggtatcagcaggc
ttcgatgctgctcggggcgaccctctgggtgggtgcctagtgaccccagaaggctatgca
cacatgacccacctgctcatgggactcgcagggggtaagatcgtggtggtgctagaggga
ggctataatctttcatccatctctgagtcaatgacaatgtgcacacgcacccttctgggg
gacaccttgccagatctcggaaagctgcgtgccccccagcgcagtgcccagcagtccgtc
accaacaccgtgtgggtgcacaagaagtactggaagagcctccagctgcatgtccctgag
tttgtgattacttgtgaagaggtgactcgagacaagcctgtcacgccaagtaaaagccgt
ggtaacaccccaaagccaagcacacctacaaggcatggaagcagctcaactgggcagaca
gttacaccagtgggtactaaaatgagcaaccaccagaaggaagaagagaatccgagaatt
ctaacaccaacatttgggaagccaatgaagcccattaggattggtagtggccatgaagtg
attgaagcagaggtgtccagggcatctgtatcatcctccaggaggtcagagaccccctta
atggttgaaactgatcaaacagtggaggaagcggtggagatgagggtgcaagtaacacag
gtagaaaagctagatagtcctggtggaattaagaatagccatgacacacagcaggtggag
actctaagaggtccattgcctacatcagacaaaccagaggccccaatggtggttgaaaat
gaccatgaagaagataaatctggacaagcatatgtgtctgtttcaccatctgagaagcaa
atgcatactgtaaggattaagaaggatcatgagccagataaaacagtgcaggctgggaac
cccatgtcacccatggagaaaaaggagcttccagtagtgaatggtaatgtatttgaattg
gaaacaatgctggagagcaaggacctcagtttaccacagtcatctgagatcctcacaatg
caggagaatctacatgattccataaatgaggttccattggtccccattttatcacctgct
gaattagaaatccccaaagagagactgaaagatccagaggaggaagcttcgaaccatgta
ggaactggttctttagtggtggaactctccaaattaatattgcagcaatctgttcccctt
gttggtgaatgtgcagactctgaagaacgagtgacagatgatccaaggaccctaaagtca
cacactgatgttgtgggttatgcacagggttcgactccagagactcccgtctgtcagtct
gtgactatggaacctgtgactcccagggaaaacagtaccattgtggaagcagcttttcta
tcacagcaaccttgtaggtttgtggctgatctgggtgaagaaaaaatgtctataaaggag
ttgtccgtagataattcaaatatgtgtttgccagttggagagaacatgacagcacaagac
tccagtaaagaccagaatgagatcctaagcataaatatggaggttctgcgattgcctgca
gtggaaccagctcctgtaactgtctacaaccttgacaaagtgatcctcaatgatgggagg
ggagacactttggtaaatggtaaatgctccactggagacaagtcatacgaccagaatcct
gccggacacacacctccactttgtgcctgtgagagccccacttcgataccagttggaggt
gctaggagaaaggtgaagccttgcatggtctcgtccgacttttctaccatagccagtgca
tgctctgtcaccgttgcatcgtcctcgtcaccgaccttatctaatcccacatatattgct
gcagcattgccaggctcgcaaggccagactttctcaactgcatccacaaagctgacttca
acctctccattggcgccctcaccttcctctcggagtctggcccaatcaacaatgttacag
gagtcatccacagctggcagtgcaattcatactgagacagtaatggggcttgaaggcagt
gatgaggaacatgtggtggacatttccctctctttgcaggtactagacatcgaaggacat
tcacaaaaggagaccccagagacctgcatttcatctagcccaaagaaggaagagcttttg
gaagaagctactggctggaccaaccctttcaactccaggcctctctgcaaacgctttggg
aactgtccagaagaggagcagagcatgttgtatgcagtcactcctctgccttggtgtcca
cacttggaatcagtgcagtccgtcccagaatgtggcctcaacgtgacagaagcctgtcaa
gagtgcagcagctcagtggaaaactgggtctgtcttgtttgttacaaggtgtactgcggg
cggtacattaatgagcacatgctgatgcatggcctggactccggtcatatggtagtgctg
agttacgctgatctctctgtgtggtgctacagttgtgagtcatacattcacaatgaggcc
cttttggaggccaagaatgtcgctcaccggatgaagtttggtgaagatgtggcctga
DBGET
integrated database retrieval system
